Trichlorobacter ammonificans: GEAMG1_1277
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Entry
GEAMG1_1277 CDS
T09459
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tamm
Trichlorobacter ammonificans
Pathway
tamm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEAMG1_1277 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tamm03019
]
GEAMG1_1277 (recQ)
03400 DNA repair and recombination proteins [BR:
tamm03400
]
GEAMG1_1277 (recQ)
Enzymes [BR:
tamm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GEAMG1_1277 (recQ)
Messenger RNA biogenesis [BR:
tamm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEAMG1_1277 (recQ)
DNA repair and recombination proteins [BR:
tamm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GEAMG1_1277 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF1039
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CAH2031107
LinkDB
All DBs
Position
GEAMG1:1337533..1339368
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AA seq
611 aa
AA seq
DB search
MSASIHDTLRTVFGFHAFRPPQQEVIERVIGGEDVFLVMPTGGGKSLCYQVPALHRRGVA
IVVSPLIALMKDQVDGLLANGVAAACLNSTLVPAEARSVFQRWDAGELDLLYVAPERLLM
ADFLERLAAVPLALFAIDEAHCISQWGHDFRPEYTQLGRLRELFPDVPLVAMTATADPET
RRDILRQLGIQGAKVYVAGFDRPNITYNVLPKQKPFVQLEAFLRNRRDEAGIVYALSRKR
VEEVAQRLRDAGFSARAYHAGLPDRERQQVQEAFRRDDLRIVVATVAFGMGIDKPNVRYV
VHYDLPKSVESYYQETGRAGRDGLPSEALLLFGMGDVMTARSLIENSENPERVRIELQKL
NAMVAYAEALTCRRRALLGYFGEQRDHECGNCDICNDPPERFDASEAVRKVLSCVYRVGE
RFGARHVIDVLRGSKGQRIAELRHDRLSTYGIGADLSGEEWDNIIRQLIHLGYLTQDFSR
YGVLGLTPAARPVLKGEVAVLLGRPRSTARVEERSRSRSRGVKESRGGLFEVLRALRKRI
ADEAGVPPFVVFSDATLVEMAQARPRDERELLSITGVGQRKLARYGALFLDAIDDHRRRA
EPGSDAGPPVD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctccatccacgacaccctgcgaaccgtcttcggcttccatgcctttcggcct
ccccagcaggaggtgatcgaacgggtcattggcggcgaggatgtgttcctggtcatgccc
accggcggcggcaagtccctctgctaccaggtgccggccttgcaccgccgcggggtggcc
atcgtggtgtcgcccctcattgcactgatgaaggatcaggtggacgggctgctggccaac
ggtgtggccgctgcctgcctcaactccaccctggtgccggccgaggcccgaagcgtcttc
cagcggtgggatgcgggagaactggacctgctgtacgtggcaccggagcggctgctgatg
gctgatttcctggagcggctggctgccgtgcccctggccctgttcgccattgacgaggcc
cactgtatttcccagtggggccacgacttccggcccgaatacacccagctcggccgcttg
cgggagctgtttcccgacgtgccgctggtggccatgaccgccaccgccgacccggaaacc
cggcgggacattctccgccagttggggatccagggggccaaggtctatgtggccgggttc
gaccggcccaacatcacctataacgtcctgcccaaacagaagccctttgtccaactggag
gcgtttctgcgcaaccggcgcgacgaggccggtattgtctatgccttaagccgcaagcgg
gtggaggaggttgcgcaacggctccgtgacgccggcttcagcgcacgggcctaccatgcc
ggcctgcccgaccgggagcgacagcaggtgcaggaggcgttccggcgggacgacctgcgg
atcgtggtggctaccgtagcctttggcatggggatcgacaagcccaacgtccggtacgtg
gtgcattacgacctgcccaagagcgtggagagctactaccaggagaccggccgggccggc
cgggatggactgccctcggaggccctgcttttgttcggcatgggggacgtcatgaccgcc
cgcagcctgatcgagaacagcgaaaacccggagcgggtgcggatagagctgcagaagctg
aacgccatggtggcctacgccgaggccctgacctgccgcaggcgggcgcttttgggctat
ttcggcgagcagcgggaccacgagtgcggcaactgcgatatctgcaacgacccgccggaa
cggttcgacgcctcggaggcggtcaggaaggtcctttcctgcgtctaccgggtgggagag
cgcttcggggcccggcatgtcatcgacgtgctgcggggaagtaaaggacagcggattgcg
gagctgcggcacgaccgtctctccacctacggcatcggtgcggacctctcgggagaggag
tgggacaacatcatccgccagttgattcacctgggatacctgacccaggatttcagccgg
tacggcgttctggggcttaccccggcggcgcggccggtgctgaaaggggaggtagcggtg
ctgttggggcggccccgcagcacggcacgggtggaggaacggtcccggagccgcagccga
ggggtgaaggaaagccgcggcggtctgttcgaggtcttgcgggccctgcgcaagcggatc
gccgacgaagccggggtacctcccttcgtggtcttctccgacgccaccttggtggagatg
gcccaagccaggccccgggacgagcgggaactgctgtccatcaccggtgtggggcagcgc
aagctcgccaggtacggggcgctgtttctcgatgccattgacgatcaccggcgcagggcc
gagccggggagtgatgccggtcctccggtcgattga
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