Trichlorobacter ammonificans: GEAMG1_1827
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Entry
GEAMG1_1827 CDS
T09459
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tamm
Trichlorobacter ammonificans
Pathway
tamm03410
Base excision repair
tamm03430
Mismatch repair
tamm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GEAMG1_1827
03430 Mismatch repair
GEAMG1_1827
03440 Homologous recombination
GEAMG1_1827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tamm03400
]
GEAMG1_1827
DNA repair and recombination proteins [BR:
tamm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GEAMG1_1827
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GEAMG1_1827
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GEAMG1_1827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
CAH2031659
LinkDB
All DBs
Position
GEAMG1:1961608..1963323
Genome browser
AA seq
571 aa
AA seq
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MNRHWRLTPYDPAAASRLTRELGLSPVIARILASRGFTTPAAADGFLSPTLAGMTDPGRM
AGMEQAVDRLLLARERQEPVCIYGDYDVDGISATALLVSALPVLGIRADYHIPHRMEDGY
GLSLDALRQLADQGYRLIISVDCGITALEEARFCRVQGLDLIITDHHQPLEELPDAVAVL
NPQRSDCPYPFKGLAGVGVAFCLLVALRSRLREQGLLDGGGPDLRQWLDLVALGTIADMV
PLTGQNRLLVSAGLQRMGNGCRTGLAALKAVATVKGAVSCGQVGFRLAPRLNAAGRLESA
LPGVELLLTDDPARAQLLARELDAANSERQQVERRIFEEAEALMALQGWNEQHASIVLSS
PLWHPGVVGIVASRLTERHARPAILLARRDDGSGKGSGRGIARFHLLEALHACAAHLERY
GGHRAAAGLTVAPGELDAFATTFERVAAAQLAATDLAPTLSLDAELTPEELNLSLVGELA
RLAPFGIGNAEPTLLLRGMRVLEARTVGDGHLKMRLEKERTIYPAIGWRMAGGPIPQRVD
IACTPELDTWGGGERLQLRLKGIRPEELHGA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaacagacactggcgtcttaccccatacgatccggccgccgcctcccggttgacgcgg
gaactcggtctttcaccggttatcgcccgcatcctggcgtcacgggggtttaccaccccg
gcggcagccgacggttttctctcccccaccctggccggcatgaccgatcccggccggatg
gccggcatggagcaggccgtggaccgcttgctgctggcccgggaacggcaggaaccggtc
tgtatctacggcgactacgacgtggacggcatcagcgccacggccctgctggttagtgcg
ctgcctgtcctgggtatccgcgccgactaccacatcccccatcgcatggaagacggctac
ggcctgagtctcgacgccctgcggcagttggccgaccagggataccgtctgatcatcagt
gtcgactgtggcatcaccgccctggaagaggcccgcttctgccgcgtccaggggctcgac
ctgatcatcaccgaccatcaccagcccctggaggagttgcccgacgccgttgccgtgctg
aatccgcagcgcagtgactgtccctaccccttcaaaggacttgccggggtgggtgtggcc
ttctgcctgttggtggcgctccgctcccggctccgtgaacaggggctgctcgacggcggc
ggccccgacctgcgccaatggctcgacttggtggccctgggcaccatagccgacatggta
ccgctcactggccagaaccggctgctggtttcggcggggctgcaacggatgggtaacggt
tgtcgcaccggcctcgccgccctcaaggccgttgccaccgtcaagggggccgtttcctgc
ggccaggttggatttcgcctggctccccgcctcaatgccgccggccgcctggaaagtgcc
ctgcccggcgtggaactgctgctcaccgacgacccggcaagggcacagctcctggcacgg
gagcttgacgccgccaacagcgaacgccagcaggtggaacgccgtatcttcgaggaagcg
gaggcgctgatggcactgcaggggtggaacgaacaacacgccagcatcgtgctttcctcc
cccctctggcaccccggcgtggtgggtatcgtcgcctcccgcctgacggaacgccacgcc
cgccccgccatcctgctggcccggcgcgacgacggcagcggtaaaggctcgggacggggc
atcgcccgcttccatctgttggaggcgctgcacgcctgcgcggcccacctcgaacggtac
ggcggccaccgggccgctgccggcctgaccgtcgctcccggcgaactggatgcctttgca
acaacttttgaacgggtggccgcggctcagctcgccgccactgatcttgcgccaacgtta
tcgctcgatgccgagttgacaccggaggagctgaatctgtcgctggtcggggagctggcg
cggcttgctcccttcggcatcggcaatgccgagccgaccctgctgctgcggggcatgcgg
gttctggaggcccgtaccgtcggcgacggacatctgaaaatgcgcctggaaaaggagcga
accatctatcctgccatcggctggcggatggcaggcggcccgatcccccagcgggtcgat
attgcctgtaccccggaactggatacctggggaggcggcgaacgactgcaactgcggtta
aagggtattcgtccggaggagctgcatggagcgtga
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