Trichlorobacter ammonificans: GEAMG1_1896
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Entry
GEAMG1_1896 CDS
T09459
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tamm
Trichlorobacter ammonificans
Pathway
tamm03030
DNA replication
tamm03430
Mismatch repair
tamm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GEAMG1_1896 (dnaE)
03430 Mismatch repair
GEAMG1_1896 (dnaE)
03440 Homologous recombination
GEAMG1_1896 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tamm03032
]
GEAMG1_1896 (dnaE)
03400 DNA repair and recombination proteins [BR:
tamm03400
]
GEAMG1_1896 (dnaE)
Enzymes [BR:
tamm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GEAMG1_1896 (dnaE)
DNA replication proteins [BR:
tamm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GEAMG1_1896 (dnaE)
DNA repair and recombination proteins [BR:
tamm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GEAMG1_1896 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAH2031728
LinkDB
All DBs
Position
GEAMG1:2032755..2036291
Genome browser
AA seq
1178 aa
AA seq
DB search
MEVAASADAVTPFVHLHLHSQYSLLDGAIRIEDLVAKAKAYNMPALAITDHGNMFGAVEF
YLKCKKAGIKPLIGCELYIAPDSRFSKDSKGISEAAYHLILLCENLEGYKNLSYLTSAGF
KEGFYYRPRIDRELLEKHADGLIALSACLKGEVAMQCGRGRMEEAIETARWYADLFPGRY
YIELQENTLPEQDTVNKRLLEVARELALPLVATNDCHYLNREDARAHEVLLCIQTGKTMS
DPTHMKFSADEFYVKTPQEMAAAFSYVPEAVANTVRIAERCNLELPLEQEYYFPHFEPPA
GKSHDDLLAEQARKGLAERLVTIRAKYPDMTPEQEQAYHDRLQVELDCIRAMKFPAYFLI
VADFINWAKEHGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLNPERISMPDID
VDFCQDQREKVIDYVVNKYGRDRVCQIITFGTMKAKAVVRDVGRALDMTYGDVDRIAKLI
PDDLKMTIEKAIKQEAQLRELAESDPKVKELLETAVCLEGLTRHASTHAAGVVVAPNRME
EFLPVYKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIQNAVRLVREGKDPNFDIA
VLRDDDKASYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGPLGCGM
VDDFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRSLAGYSLGRADLLRRAM
GKKDPAVMAKEKEPFLAGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHSAAYALIAYQTA
YLKAHYPVEFMAALLTCDMDSTDKVLKNISDCREQGIEVLPPDINSSGQSFTVVGNSMRF
GLGAIKGVGAGAVESIIEARAEGPFTDLYDFCERVDLRRVNKRVLEALIKCGAFDSLHRW
RAPLMAALDDAMATGQKFQEERDSAQVSLFGDMPAATAPRSGRKLPNVEEWHDKEKLGYE
KEALGFLITGHPLDRYAADIQRLASSTITGLSDLPDGSEVRLCGIVTACKEITTKKGDRM
GFVTLEDLTGAIEITVFSDMYVPAVGLLKSDDPLVITGKLEKGEKGCKLLVMKPQEGNGR
KFQQGGNGDIRLLHDVQAQATTRVRLALRLPELSSDRLQPIRELLERYPGNLPVQVQFEI
PNRSRTTIKLPDHLKVAASDEFRVAVERCVGYNAAIFE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgctgcatcggcagacgccgtcaccccttttgtccatctccacctccattca
cagtattcgctgctcgacggcgccatccggatcgaagacctggtggccaaggccaaggcc
tacaacatgccggccctggccatcaccgaccacggcaacatgttcggggccgtggagttc
tacctcaagtgcaagaaagccggcatcaagccgctgatcggctgcgagctgtacatcgcc
cctgattcgcgtttttccaaggattcaaaaggaatctccgaggctgcctaccatctgatt
ctgctctgcgagaacctagaggggtacaagaacctctcctacctcacctccgccgggttc
aaggaggggttctactaccgcccccgcatcgaccgggagctgctggaaaagcatgccgac
ggcctgattgcgctctccgcctgcctgaaaggcgaagttgccatgcagtgcggccggggc
cggatggaggaggcgatcgagaccgcccgctggtacgccgacctgtttcccggacgctac
tacatcgaactgcaggaaaacaccctgccggagcaggatacggtcaacaagcggctcctg
gaggtggcccgggaactggccctgcccctggtggccaccaacgactgccactacctgaac
cgggaggatgcccgggcccatgaggtgctgctctgcatccagaccggcaagaccatgtcc
gacccgacccacatgaagttctcggcggacgagttctacgtcaagaccccgcaggagatg
gcagcggccttttcctacgtgccggaggcggtggcaaacacggtacggatcgcggagcgc
tgcaacctggagctgccgctggagcaggagtactacttcccccacttcgaaccgccggca
gggaaaagccacgacgacctgctggccgagcaggcccgcaaagggttggcagagcggttg
gtgaccatccgggccaagtacccggacatgacccccgagcaggagcaggcctaccacgac
cgcctgcaggtggagctggactgtatccgcgccatgaagttcccggcctacttcctgatc
gtggccgacttcatcaactgggccaaggagcacggcatcccggtgggaccgggacggggc
tccgccgccggctccctggtggcctacgccatccggatcaccgacctggacccgctgccc
tacaacctgctgttcgagcggtttttgaacccggaacggatatccatgcccgatatcgac
gtggacttctgccaggaccagcgggaaaaggtgatcgactacgtggtcaacaagtacggc
cgcgaccgggtctgccagatcatcaccttcgggaccatgaaggccaaggcggtggtgcgg
gatgtggggcgggctctggacatgacctacggcgacgtggaccggatcgccaagctgatc
ccggacgacctgaagatgaccattgagaaggccatcaagcaggaagcccagctgcgggaa
ctggccgaaagcgatcccaaggtgaaggagctgctggaaaccgcggtctgcctggaggga
ctcacccgccacgcctccacccatgccgcgggcgtcgtggtggcccccaaccggatggag
gagtttctgccggtctacaaggaccagaagaccggctccatcaacacccagtactccatg
aagtacgtggagatggtgggcctggtgaagttcgacttcctgggtctcaagaacctcacc
gtgatccagaacgcggtacggctggtgcgggaggggaaggacccgaacttcgacatcgcg
gttctgcgggacgacgacaaggccagttacgacctgatctcctccggcaacaccaccggc
atcttccagcttgaatccagcggcatgaaggagatgctggtcaagctgaaaccctcctgc
ttcgaagacgtcatcgccgcctgcgccctctaccgtcccggccccctgggctgcggcatg
gtggacgactttatcgaacgcaaacacggccgccagaaggtggtctacgacctgccccag
ctggagccgatcctgaaggacacctacggggtcatcgtctaccaggagcaggtcatgcag
atttcccgctccctggccggctactccctgggacgggccgacctcttgcgccgcgccatg
ggaaagaaggacccagcggtcatggccaaggaaaaggagccgttcctggccggggccaag
gcccaagggatcgaccccaagaaggccgaggcgattttcgaccagatggccaagttcgcc
gagtacggcttcaacaagtcccactccgccgcctacgcgctgatcgcctaccagaccgcc
tatttgaaggcccactacccggtggagttcatggcggccctgctgacctgcgacatggac
agcaccgacaaggtgctgaaaaacatcagcgactgccgcgaacaggggatcgaggtgctg
ccgccggacataaacagctccggccagtccttcaccgtggtggggaactccatgcgtttc
ggcctgggggccatcaagggggtgggagccggtgccgtggagtcgatcatcgaagcccgg
gccgaaggccccttcaccgacctgtacgacttctgcgagcgggtggacctgcggcgggtc
aacaagcgggtgctggaagcgctgatcaagtgcggcgccttcgactccctgcacagatgg
cgggccccgctgatggcggccctggacgacgccatggccacgggccagaagttccaggaa
gagcgggacagtgcccaggtgtcgctcttcggcgacatgcccgccgcaacggcgccccgt
agcggccgcaagctgcccaacgtcgaggagtggcacgacaaggaaaaactgggctacgaa
aaggaggccctgggcttcctgatcaccggccacccccttgaccgctatgccgcggacatc
cagcgtcttgccagcagcaccatcaccggcctctccgacctgccggacggcagcgaggtg
cgcttgtgcggcatcgtcaccgcctgcaaggagatcaccaccaaaaaaggggaccggatg
gggttcgtcaccctggaggacctgaccggcgccatcgagatcaccgtcttctccgacatg
tacgtcccggccgtggggctgcttaagtccgacgatccgctggtgatcaccggcaagctg
gaaaagggggaaaaggggtgcaaactgctggtgatgaagccccaggaggggaacggccgc
aagtttcagcaggggggcaacggcgacatccgcctgctgcacgacgtgcaggcccaggcc
accacccgggtccggctggcgctgcggctgccggagctctccagcgaccggctgcagccg
atccgggaactgctggagcggtaccccgggaacctgccggtgcaggtgcagtttgaaatc
cccaaccgcagccgcaccaccatcaagctgcccgatcacctgaaggtggcggccagcgat
gaatttagggtggcggtggagcggtgtgtcggctataatgccgcaattttcgagtag
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