Trichlorobacter ammonificans: GEAMG1_2871
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Entry
GEAMG1_2871 CDS
T09459
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tamm
Trichlorobacter ammonificans
Brite
KEGG Orthology (KO) [BR:
tamm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tamm03016
]
GEAMG1_2871
Enzymes [BR:
tamm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GEAMG1_2871
Transfer RNA biogenesis [BR:
tamm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GEAMG1_2871
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
CAH2032707
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All DBs
Position
GEAMG1:complement(3046728..3047864)
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AA seq
378 aa
AA seq
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MAYTLIESTSLLAQVCDSLRGAPELALDLEADSLHHYREKVCLLQLSSREATWLIDPLQV
DDLAPLAALLADPAVLTVFHGGDYDIRSLHRDFGITVARMFDTMIAAQFLGKPEFGLAAL
LRNHFGVELDKKYQKADWSKRPLTPEMAAYAANDTAHLLRLADLLRGRLDECGRTAWVAE
ECALVAANRMAEKGEGPLFLQFKGAGKLKPRNLAVLEELLQLRDGLARELDRPPFKVLPS
EALLQLAERQPDTLPEMDGIAGLTPKLKSRHGERLLAAVQHAKALPDNELPRYPRTRGEA
NPGVKARLTGLKQWREHFSGSIGLSPGLIAPNWLLERIAEQQPDNPAQLAALPGVRRWQT
DLWGSEVMTLLAKEKQAP
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggcctatacgttgattgaaagcacctcgctgctggcgcaggtttgcgacagtttgcgc
ggagcaccggaactggcccttgacctggaagccgattcactgcaccactaccgcgaaaag
gtctgcctgctgcagctttccagtcgggaggccacctggctgatcgacccgttgcaggtt
gacgatctggcgccattggcggcgttactggcagacccggcggtactgaccgtgtttcac
ggcggcgattacgatatccgttcgctgcatcgcgacttcggtatcaccgtggcccgtatg
ttcgacaccatgattgccgcccagtttctgggaaaaccggagtttgggcttgccgcgctg
ctgcggaaccatttcggtgttgagcttgacaagaagtaccaaaaggccgactggagcaaa
cgtcctctgacgccggagatggcggcctatgccgccaacgatacggcacacctgctcagg
ctggccgatctgctgcgcggtcggctcgacgagtgcggccgcactgcctgggtagcggag
gaatgtgccctggtggcggcaaaccggatggccgaaaaaggggaggggcctttgttcctg
cagttcaagggggcgggcaagctcaagccccgtaaccttgctgttttggaagaactgctc
cagctgcgggacgggttggcccgggagttggaccgtccgccgttcaaggtgctgccgtcg
gaggcactgctgcagcttgcggagcgtcagccggatacgcttccggaaatggacggcata
gcggggctgacgccgaaactgaagagtcgccacggtgagcggctgctggctgctgtccag
catgccaaggcgttgcctgacaatgagctgccccggtacccccgtacccgcggcgaggcc
aatcccggcgtcaaggcccggctcaccgggttgaaacagtggcgagagcacttcagcgga
tcaatcggcctgtcccccggcctgatcgctcccaactggctactggaacggatcgctgaa
cagcagcccgacaatccggcacagcttgccgccctgccgggcgtgcgccgctggcagacg
gacctctggggcagcgaggtgatgaccctactggcaaaggagaagcaggccccatga
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