Tahibacter amnicola: N4264_03170
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Entry
N4264_03170 CDS
T09840
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tamn
Tahibacter amnicola
Pathway
tamn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tamn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
N4264_03170 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tamn03400
]
N4264_03170 (recB)
Enzymes [BR:
tamn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
N4264_03170 (recB)
DNA repair and recombination proteins [BR:
tamn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N4264_03170 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UXI68667
LinkDB
All DBs
Position
768704..772366
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AA seq
1220 aa
AA seq
DB search
MSVPQPLDPMTFPLRGVRLIEASAGTGKTWTIAALYLRLVLGHGCDGPLLPPQILVVTFT
RAATAELRERIRARLVEAAAVFRSGAAVEPFLQALLATQSDAAARATAAARLELAAQWMD
EAAIYTIDAWSQRMLSQFAIGSGSPFDFDLVEDESELIVEATRDYWRSEAYALDTHQAAW
LVGTVETPDALAGLLRNALGRRTDNAQLTGIDPSIPLGGSLREVMTAMAGSLHRHKRECA
AQVEALQAFLDGLVAAQRINGARLKPSRYTEWLSRLRAWAEDAAPVAPALTESAWERLTV
DGIRNALKDDGPVEWPAALAAVGTLRTAVAQCLDLQGVLVAHAVDRVRERIIAAKRRRAT
LGFDDVKRRLELAVSRDITGRLAVAIAAQYPVALVDEFQDTDAVQWRLFHGIYGNHPSAA
LLLIGDPKQAIYSFRGADIHTYLAARESAEQPRYTLSTNFRSTAPLVGAVNRLFEHGMQW
PDGPFAFGAAGHGLPFHPVDAAGRASALVIDGNPVPAMHLWLHAPDDAPGKARYMDVMAA
ATTAEVARLLSLAAAGRCGFAAPAAFAPLRPADIAILVRDVGEARVMRAALDRAGLRSVY
LSDRDSVYDTAEAADVLTWLGACAEPGEERRLRSALATATLDLPWSQLDALNHDEAAWEQ
QLERFRRYQQVWRSAGVLAMLTALLHEFDVPARCLARAGGERALTNVLHLAELLQEASVT
LDGEGALVRHLRETIAGDVAGDAALLRLESDAGLLKLVTVHKSKGLEYPLVFLPFACNFR
EVGASGPRRTVWYAWHGADGRLHLDVSLDEVSRRRADRERLQEELRLLYVAVTRASFACW
IGVAALRMGNAKVSQLHKSAVGYLLKGGEAIAAGELASLLARLAEGQSGMVVGEPPGSDG
TRPQVPAPVTLALARPYRGAPPPRWWIASYSALRLAGSDSAHTPGEPETAGQAVLAERVH
DLVPLAEAISEQLAPLAAFPRGAAPGTFLHGLLEWSAQQGFAQSLSDTALLTQTIARRCQ
RRGLAPWIGALSRWMQYFLTVPLACAEGTVSLAALPMTHYQAELEFWFEAAQVDVARLDR
LVTQATLDAQARPPLEPDRLNGLLKGFIDLVFCHAGRYYVVDYKSNWLGPDAAAYDAATL
RQAILVNRYDMQYCLYILALHRQLRARLPDYDYDRHVGGAMYLFLRGVDTAGHGVHRERP
PRALIEHMDRLFAGAGAADA
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgccgcaaccgctggatccgatgacgtttcccctgcgcggcgtccgccttatc
gaggccagcgcgggcaccggcaagacctggaccatcgccgcgctctatctgcgtctggtg
cttggccacggctgcgacgggccgctgctgccgccgcagatcctggttgtcacgttcacc
cgtgcggcgacggcggagttgcgcgagcgcattcgcgcccgcctggtggaagcggcggcc
gtgttccggagcggcgcggccgtcgaacccttcctgcaggcattgctggcgacccagtcc
gacgccgccgcccgcgcgacggcggccgcgcggctggaactggccgcgcagtggatggac
gaggcggcgatctacacgatcgacgcctggagccagcgcatgttgtcgcagtttgcaatc
ggcagcggcagcccgttcgacttcgatctggtcgaggacgagtcggaactgattgtcgag
gcgacgcgcgactactggcgcagcgaggcgtacgcgctggatacgcaccaggcggcctgg
ctggtcggcacggtggaaacgcccgatgcgctggcgggcttgctccggaacgcgctgggc
cgccgtaccgacaacgcgcagctgaccggcatcgacccttcgatcccgcttgggggctcc
ttgcgcgaagtgatgacggcgatggccggctcgctgcaccgccacaagcgcgaatgcgcc
gcacaggtcgaggcgttgcaggcgttcctcgatgggctggtggccgcccagcggatcaat
ggtgcgcggctcaagccctcgcgctacaccgaatggctgtcgcggctgcgggcctgggcg
gaggacgccgcgccggtagcgcctgccttgaccgagtcggcctgggaacggctcacggtc
gacggtatccgcaacgcgctcaaggacgacggtcccgtcgaatggccagcggcgctggcg
gcggtcgggacgttgcgcacggccgtggcgcaatgccttgaccttcagggcgtgctggtg
gcgcatgccgtcgatcgtgtccgcgaacgcatcatcgcggccaagcggcggcgggcgacg
ctgggctttgacgacgtgaaacgccgtctggaactggcggtcagccgcgatatcaccggg
cgactggcggtggccattgccgcgcagtatccggtcgcgctggtcgatgaattccaggat
accgatgcggtgcaatggcgcctgttccatggcatctacggcaaccatccgtcggccgcg
ctgctgctgatcggtgatccgaagcaggcgatctacagcttccgcggcgcggacatccac
acctacctggcggcccgcgaaagcgccgagcaaccgcgctacaccttgagtaccaacttc
cgctcgacggcgcccctggtcggtgcggtgaaccgcctgttcgaacacggcatgcagtgg
ccggacggtccgttcgcctttggcgcggccgggcacggcctgccatttcatccggttgac
gcggccggtcgcgccagcgcactggtgatcgacggcaatccggtaccggccatgcacctg
tggctgcatgcgcccgatgacgcgccggggaaggcacgttacatggacgtcatggccgcg
gcgacgacggcagaggttgcccgcctgctgtccctggcggccgccgggcgctgcggtttc
gcagcgcccgcggcattcgcgccgctgcggccggcggatatcgctatcctggtccgcgac
gtcggcgaggcacgcgtgatgcgtgccgccctggaccgggccggcctgcgcagcgtctac
ctgtccgatcgcgacagcgtgtacgacaccgcggaagcggccgacgtgctgacctggctg
ggtgcctgcgcagagccaggcgaggagcgccggctgcgttccgcgctggccaccgccacg
ctggacctgccctggtcgcagctggatgcactcaaccacgacgaagcggcctgggaacag
cagctggaacgttttcggcgctaccagcaggtgtggcgcagcgccggcgtgctcgccatg
ttgaccgcattgctgcatgaattcgatgtccccgcgcgctgcctggcgcgcgccggtggc
gaacgggcgctgaccaatgtgctgcatctggccgaactgctgcaggaagcctccgtcacg
ctcgatggcgagggggcactggttcgtcatctgcgcgagaccatcgcaggtgatgtggcc
ggtgacgccgcgctgctgcggctggaaagcgatgcgggcctgctcaagctcgtcaccgtg
cacaagtccaagggactggaataccccctggtgtttctgccgttcgcgtgcaatttccgc
gaggtcggcgcgtcgggcccgcgccgcaccgtgtggtacgcctggcacggagcggatggg
cgcttgcacctggatgtgtcgctggacgaggtgtcgcggcgtcgtgccgaccgtgaacgt
ctccaggaagaactgcgcctgctctacgtcgctgtgacgcgcgccagtttcgcctgctgg
atcggcgttgcggcgcttcgcatgggcaatgccaaggtctcgcaactgcacaaatccgcc
gtgggatacctgctcaagggcggtgaggcgattgcagctggcgagctcgccagcctgctg
gcgcgtcttgcggaagggcagtccggcatggtcgtcggcgagccgccgggcagtgatggc
acgcggccgcaggtgccggcaccggtcacgctggcgttggcccggccgtaccggggagcg
ccgccgccgcggtggtggatcgccagctacagcgcactgcgcctggccggaagcgacagc
gcgcacacgccgggcgaaccggaaaccgccggccaggccgtgctggccgagcgtgtgcac
gacctggtaccgctcgctgaggccatttcagagcaactcgcgccgcttgctgcgtttccg
cgcggggcggcgcccggtactttcctgcatggcctgctcgagtggtcggcgcaacaggga
tttgcccaaagcctgtcggacaccgcactgctgacccagaccattgcgcgccgctgccag
cggcgtggtctggcgccctggatcggtgcgctgtcgcggtggatgcagtacttcctgacc
gttccactggcctgcgccgagggtacggtcagtctggctgcattgccgatgacgcactac
caggcggaactggaattctggttcgaggcggcgcaggtggacgtggcccggttggaccgg
ctggtcacgcaggcgacgctggacgcgcaggcacgcccgccgctcgaaccggatcgcctc
aatggcctgctcaagggtttcatcgacttggtgttctgccatgccggccgatactacgtc
gtcgactacaagtccaactggctcggccccgatgcggctgcctacgacgccgcgacgctg
cgccaggcgatcctggtcaatcgctacgatatgcagtactgcctctacatcctcgcactg
catcgccagctgcgggcgcgcctgccggactacgactacgaccgtcacgtgggtggtgcg
atgtacctgttcctgcgcggtgtcgatacggccggtcatggcgtgcaccgggaacgcccc
ccgcgggcgttgatcgagcacatggaccggctcttcgccggcgcgggagcggctgatgcg
tga
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