Tahibacter amnicola: N4264_19240
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Entry
N4264_19240 CDS
T09840
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tamn
Tahibacter amnicola
Pathway
tamn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tamn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N4264_19240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tamn03019
]
N4264_19240
03009 Ribosome biogenesis [BR:
tamn03009
]
N4264_19240
Enzymes [BR:
tamn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N4264_19240
Messenger RNA biogenesis [BR:
tamn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N4264_19240
Ribosome biogenesis [BR:
tamn03009
]
Prokaryotic type
rRNA helicases
N4264_19240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UXI66871
LinkDB
All DBs
Position
4907995..4910052
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AA seq
685 aa
AA seq
DB search
MTNDNESPTPAPQTFRDLALPETVLRALDDVGYESPSPIQAATIPPLLEGRDVLGQAQTG
TGKTAAFALPVLARIDPARRTPQALVLTPTRELAIQVAEAFQRYAAHLPQFQILPIYGGQ
GYGPQLSALRRGVHVVVGTPGRVIDHMNRGTLDLSALDCLVLDEADEMLRMGFVDDVEAV
LEKTPPTRQIALFSATMPAPIRRIAQTHLKDPVEITIKSKTQTAANIRQRYWAVSGLHKL
DALTRILEAETFDAMIIFARTKQATEELAEKLAARGLSAAAINGDIPQQQRERTIQRLKD
GQLDILVATDVAARGLDVERISHVLNYDIPYDTEAYVHRIGRTGRAGRSGEAILFVTPRE
RGMLRAIERATRQPIESMVLPTVEAVNDQRIVRFKQRITDALTDESLDLYRQLVDSYERE
HNVPANEIAAALARIVQGETPLLLDPDRKPQRSEQEKWAARRETKGEWQERDARGSRDSR
SPREGRPERPRRDESNASSPRPAHFNTAPAAAPRPEPAERPAPHTIERLETTPAATRDHV
DAPRERPSAERPPRERSRAERPRGSEEGKETFRIEVGHAHGVKPANIVGAIANEAGLDSA
HIGRIDIRDDHSFVDLPEGMPGDVFKHLKKVWVSGQQLRITRASEEPEARDRFPRKPRSD
RPTDQRPGNKGFARGERGKAPPKRR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgataacgaaagcccgacgccggctccgcagaccttccgcgaccttgccctg
cccgaaacggtcctgcgcgcccttgatgacgtgggctatgagtcgccctcccccatccag
gccgcaaccattccgcccctgctggagggccgcgacgtgctcggccaggcccagaccggc
accggcaagaccgccgccttcgccctgcccgtgctggcccgcattgatccggcccgccgt
accccccaggccctggttctgacccccactcgcgagctggccatccaggtcgccgaggcg
ttccagcgctatgcggctcacctgccgcagttccagattcttcccatctacggcggccag
ggctatggcccgcagctgagcgcactgcgccggggcgtgcatgtcgtggtgggaaccccc
ggccgcgtgatcgaccacatgaaccgcggcaccctcgacctttccgcgctggactgcctg
gtcctggatgaagccgacgaaatgctgcgcatggggttcgtcgacgatgtcgaggccgtg
ctcgaaaagacgccgccgacccgccagattgccctgttctcagccacgatgccggcgccg
atccgtcgcatcgcgcagacgcacctgaaggacccggtcgagatcaccatcaagagcaag
acccagaccgcggccaacatccgccagcgctactgggccgtgagcggactgcacaagctc
gatgcgctcacccgcatcctggaggccgagaccttcgacgcgatgattatcttcgcgcgc
accaagcaggccaccgaagagctcgccgaaaaactcgccgcgcgcggcctttccgccgcc
gccatcaacggcgatatcccgcagcagcagcgcgagcgcacgatccagcggctcaaggat
gggcagctcgacatcctcgtggccaccgacgtcgccgcgcgcggcctggacgtcgaacgc
atcagccatgtgctgaactacgacattccctacgacaccgaagcctacgtgcaccgcatc
ggccgcaccggtcgtgccggccgcagcggcgaagcgattctcttcgtcactccgcgcgag
cgcggcatgctgagggcgatcgagcgggccacgcgccaaccgatcgaatcgatggtgctg
ccgacggtcgaggcagtgaacgaccagcgcatcgtgcgcttcaagcagcgcatcaccgat
gcactgaccgacgaatcgctcgacctctaccggcaactggtcgacagctacgagcgcgag
cacaacgtgcccgcgaacgagatcgcggcggcgctggcgcgtatcgtccagggcgaaacg
ccgctgctgctggacccggaccgcaagccgcaacgcagcgaacaggaaaagtgggcagcc
cggcgcgagacgaagggcgaatggcaggaacgcgacgcccgtggcagtcgcgattcgcgc
agcccgcgcgaggggcgtccggaacgaccgcggcgggatgaatccaacgccagttcgccg
cgccccgcgcacttcaacaccgctccggccgctgcaccgcgaccggagcctgccgagcgt
cccgccccgcacacgatcgagcgcctggaaaccacgccggcggccacgcgtgatcacgtc
gacgcgccgcgcgaacgcccctcggcggagcgaccgccgcgcgagcgcagccgagccgaa
cgtccgcgcggttcggaagaaggcaaggagacattccgcatcgaggtcggccacgcccac
ggcgtgaaaccggccaacatcgtcggagccattgccaacgaggcgggcctggacagcgcg
catatcggtcgcatcgacatccgcgacgaccacagtttcgtcgacctccccgagggcatg
cccggcgatgtcttcaagcatctgaagaaagtctgggtctccggtcagcaactgcgcatt
acacgtgcatcggaagagcccgaagcgcgggatcgcttcccgcgcaaaccgcgcagcgac
cggccgaccgaccagcgccccggcaacaagggcttcgcgcgcggcgaacgcggcaaggca
ccaccgaaacgacgctga
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