Tahibacter amnicola: N4264_20665
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Entry
N4264_20665 CDS
T09840
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tamn
Tahibacter amnicola
Pathway
tamn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tamn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N4264_20665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tamn03019
]
N4264_20665
03009 Ribosome biogenesis [BR:
tamn03009
]
N4264_20665
Enzymes [BR:
tamn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N4264_20665
Messenger RNA biogenesis [BR:
tamn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N4264_20665
Ribosome biogenesis [BR:
tamn03009
]
Prokaryotic type
rRNA processing factors
N4264_20665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
UXI67134
LinkDB
All DBs
Position
5274744..5278724
Genome browser
AA seq
1326 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQSLFDLDIEIPSKEQKKANIYKGRITRVEPSLEACFVEY
GGERHGFLPLKEIAREYFTPGVDHNRAGIRELIKEGQEIVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPRAGGVSRRIEGEDRANLKEVMDQLNCPDDMGLIIRTAGMGRDAEELQ
WDLDYLLQLWKAISEAAILRPAPFLIYQESKLIIRALRDYLRNDIGEILIDNEELYGDAR
DFMQQVMPNNLRKLKLYRDTTPLFSRFQIETQIENAFERTVRLPSGGSIVIDQTEALTAI
DINSAKATKGGDIEETAFNTNREAAIEIARQLRIRDAGGLIVIDFIDMDSPKHQREVEET
LKDALKLDRARVQLARISRFGLLEMSRQRLRPSLGESTQIVCPRCTGHGRIRSIESLSLS
ALRLVEEHAMKDNTGQVLVQAPSTVANFLMNEKRRQITEIEQRHDVAVIVVADEKLETPH
LEIQRIKTADISDTVRPSYDRLTPVIVAQPPQVAQPSAEAERPAVSRVVPASPAPLRPEA
EAEEAAATAAPRPATPPVGFFSRMMSWFKKPAEEPTPPAPAAKAPAKPAGRTEGRDQRDQ
RGRQGREGRAEQRDNRDAQRSRGDQPRGTRADQPARGDQPRGEGQGKQSRQESAQQQGAK
PQQQQQASQQRQQQQRQPNEARAEGAPKADGGKPQQERRGGQESKPRQPQERSEQQRPAA
EARPEQKPAAPKPAAETPADATTVVAADAAATAPAAPAAGAGEETTREGGRRRRGRRGGR
RRRRQEGGAEQGDLAENAIDADLDDEEGDGDTAEDSDAPATASEPRERKVAERVTAAPAS
TAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPAS
TAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPAS
TAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTASASTAPASTAPAS
TASASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASAAPASTAPASTAPAS
TAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPASTAPAS
TAPASTAPASTAPASTAPASAAPASTAPASAAPASTAPASTAPASTAPASTAPAPTASAP
TASAPTASAPTASAPAAASPPVAKPATPSASGPTGADPAGRPRSEAAQLSLSMPEPRRES
PKASPDTSSDDLRGHPADALLPPTATSVRQAVASALRTPATPSTGASSADTPSENAAKED
DASKDA
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgatcaacgcaactcagcgtgaggagttgcgtgtggccatcgtggac
ggccagtcgctcttcgacctcgatatcgagatcccctccaaggaacagaaaaaggccaat
atctacaaaggccgcatcacgcgggtcgagccctcgctggaagcctgcttcgtcgaatac
ggcggagaacgccacggcttcctgcccctgaaggaaatcgcgcgggaatatttcaccccg
ggcgtcgaccacaaccgcgccggcatccgcgagctcatcaaggaaggccaggaaatcgtc
gtccaggtcgagaaagaagaacggggcaacaagggtgcggccctgaccaccttcatctcc
ctggccggccgctacatggtcctgatgccgaacaatccgcgcgcaggcggggtttcccgg
cggatcgaaggcgaagaccgcgccaacctcaaagaggtgatggaccagctcaactgcccg
gacgacatggggctgatcatccgcaccgccggcatgggccgcgacgcggaagaactgcag
tgggacctggactacctcctgcagctgtggaaggcgatctccgaggctgcgatcctgcgc
ccggcgccattcctgatctaccaggaatccaagctgatcatccgcgcgctgcgcgactac
ctgcgcaacgacatcggcgagatcctcatcgacaacgaggaactctacggcgacgcgcgc
gacttcatgcagcaggtgatgcctaacaatctgcgcaagctcaagctttaccgcgacacc
acgccgctgttctcgcgcttccagatcgaaacgcagatcgagaacgcgttcgagcgcacg
gtacgcctgccctccggtggttcgatcgtcatcgaccagaccgaggcgctgaccgccatc
gatatcaactccgccaaggccaccaagggcggcgatatcgaggaaactgccttcaacacc
aaccgtgaagccgcgatcgaaatcgcccgccagctgcgcatccgtgacgccggcggcctg
atcgtcatcgacttcatcgacatggacagccccaagcaccagcgcgaagtcgaggagaca
ctcaaggacgcgctcaagctcgacagggcccgcgtacagctcgcgcgcatctcgcgcttc
ggcctgctggaaatgtcgcgccagcgtctgcgtccgagcctgggcgagtcgacccagatc
gtctgcccgcgctgcacgggccatggccgcatccgcagcatcgagtcgctgtcgctgtcg
gcgctgcgcctggtcgaagagcacgcgatgaaggacaacaccggccaggtgctggtgcag
gctccatcgacggtggcgaacttcctgatgaacgagaagcgccgccagatcaccgagatc
gagcagcgccacgacgttgccgtgatcgtcgttgccgacgagaagctcgaaacgccgcac
ctggaaatccagcgcatcaagacggcggacatctccgacacggtgcgtcccagctatgac
cgcctcacgcccgtgatcgtggcgcagcccccgcaggtggcccagccgagcgccgaggcc
gaacggccggccgtgagccgcgtggtgcccgccagccccgcaccactgcgtccggaggcg
gaagccgaagaggccgcagccaccgccgcgccgcgaccggcgacgccgcccgtgggcttc
ttcagccgcatgatgagctggttcaagaagccggccgaggaacccactcccccggcaccc
gccgccaaggcgccggccaagccggcgggccgcaccgaaggtcgcgaccagcgtgaccag
cgcggacgccagggccgcgaaggccgcgcggaacagcgcgacaaccgtgacgcgcaacgc
agccgtggcgaccagccgcggggcacgcgcgccgatcagcctgcccgcggcgaccagccg
cgcggtgaaggccagggcaagcaatcgcgccaggaatccgcacagcagcaaggggccaag
ccccagcagcaacagcaggcgtcccagcaacggcagcagcaacagcgccagccgaatgaa
gcgcgcgcagagggcgcgccgaaggccgacggcggcaagccgcagcaggagcgccgcggc
ggccaggaatccaagccccgccagccccaggaacgcagcgagcaacagcgccccgccgcg
gaagctcgtccagagcagaaaccggccgcgccaaagccggcggctgaaacaccggcagat
gctacgactgtcgtagcagcagacgcggccgccaccgcgccggcagcacctgctgcgggc
gccggcgaagaaaccacgcgcgaaggcggccgccgccgccgtggtcgtcgtggcggacgt
cgccgccgccgtcaggaaggtggcgccgagcagggcgatctggccgaaaacgctatcgac
gctgacctggacgacgaagaaggcgacggcgatacagccgaagactcggacgcgcccgct
acagcatccgaaccgcgggaacggaaagtcgcagagcgagtgactgcggctccggcttcg
acggctccggcttcgacggctccggcctcgaccgctccggcctcgaccgctccggcctcg
accgctccggcctcgaccgctccggcctcgaccgctccggcctcgaccgctccggcctcg
accgctccggcctcgaccgctccggcctcgacggctccggcttcgaccgctccggcttcg
accgctccggcttcgaccgctccggcttcgaccgctccggcttcgacggctccggcttcg
acggctcccgcttcgaccgctcccgcttcgaccgctccggcttcgaccgctccggcttcg
accgctccggcctcgaccgctccggcctcgaccgctccggcctcgaccgctccggcctcg
accgctccggcctcgaccgctccggcctcgaccgctccggcctcgaccgctccggcctcg
accgctccggcctcgaccgctccggcctcgaccgctccggcctcgaccgctccggcctcg
accgctccggcctcgaccgcttcggcctcgaccgctccggcctcgaccgctccggcctcg
accgcttcggcctcgaccgctccggcctcgaccgctccggcctcgaccgctccggcctcg
accgctccggcctcgaccgctccggcttcgaccgctccggcttcgaccgctccggcttcg
accgctccggcttcggccgctccggcctcgaccgctccggcctcgaccgctccggcctcg
accgcgccggcttcaaccgctccggcttcgaccgctccggcttcgaccgctccggcttcg
accgctccggcttcgaccgctccggcttcgaccgctccggcttcgaccgctccggcttcg
accgctccggcttcgaccgctccggcttcgaccgctccggcttcgaccgctccggcttcg
accgctccggcttcgaccgctccggcttcgaccgctccggcttcgaccgctccggcttcg
gccgctccggcttcgaccgctccggcttcggccgctccggcttcgaccgctccggcttcg
accgctccggcttcgaccgctccggcctcgacggctccggctccgacggcttcggctccg
acggcttcggctccgacggcttcggctccgacggcttcggctccggccgcagcttcgcca
cccgttgccaagccggccacgccatcggcatcgggtccgaccggtgcagacccggccggt
cgtccgcgttcggaagctgcgcagctgtcgctgagcatgcccgagccacgccgtgaatcg
ccaaaggcgtcgccggatacgtcctccgatgatcttcgcgggcatccggcggacgcactg
ctcccaccgaccgccaccagtgtccgccaggccgtcgcatcggcgctgcgcacgccggcg
acgccgtccacgggtgcatccagcgcggataccccgtcggaaaacgccgcaaaagaggat
gatgcgtcgaaagacgcgtga
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