Tahibacter amnicola: N4264_22065
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Entry
N4264_22065 CDS
T09840
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tamn
Tahibacter amnicola
Pathway
tamn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tamn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N4264_22065 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tamn03021
]
N4264_22065 (rpoB)
03400 DNA repair and recombination proteins [BR:
tamn03400
]
N4264_22065 (rpoB)
Enzymes [BR:
tamn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N4264_22065 (rpoB)
Transcription machinery [BR:
tamn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N4264_22065 (rpoB)
DNA repair and recombination proteins [BR:
tamn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N4264_22065 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF2001
Motif
Other DBs
NCBI-ProteinID:
UXI67395
UniProt:
A0ABY6BC20
LinkDB
All DBs
Position
complement(5611829..5615995)
Genome browser
AA seq
1388 aa
AA seq
DB search
MTYSFTQKKRIRKDFGKRPAVLDVPFLLAIQVDSYREFLQLESGGITAREDKGLHAALKS
VFPIVSYSGNAALEYVSYRLGEPPFDERECRQRGMSYGAPLRVTVRLVIYDRESPASNKA
IKYVKEQEVYMGELPLMTETGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFS
ARVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYSNAEMLDLFFEKNVFNLG
KQGGAELELVAERLRGETLNFDLRVGEKVVVEAGKRITARHVRELQKEKIESLEVPDDYL
LGRILAHDVIDTKTGELLALANDELNETSLEKFRKGGVDKIATLWVNDLDRGPYISTTLR
IDSTKTPLEALVEIYRMMRPGEPPTKEAAQNLFYNLFFTFERYDLDRVGRMKFNRRVGRK
DDVGPGILYDHKYLSERNDDESKRLVKELGQTSDILDVIRTLCEIRNGRGVVDDIDHLGN
RRVRSVGEMAENVFRIGLVRVERAVKERLSLAESEGLTPQELINAKPVAAAIKEFFGSSQ
LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG
LINSLAVYARTNDYGFLETPYRRVTDGKITTEVDYLSAIGEGEFVIAQANSPMTEDRRFV
DEYVACRFRGESELRLASDVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV
PTLRAEKPLVGTGIERAVARDSGVLVLARRGGIIDQVDAGRIVVRAHEEEVDDNDAGVDI
YTLTKYTRSNQNTCMNQRPLVKVGDVVAKGDALADGPSTDIGELALGQNMLVAFMPWNGY
NFEDSILISERVVEEDRYTTIHIEELTCVARDTKLGPEEITADIPNVGEQALSRLDESGV
VYIGAEVKAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVID
VQVFTRDGIEKDKRARQIEEMEVKRVKKDFDDQFRILESAIYARLRSALVGKVANHGPNN
LKKGSELTNEYLDELKKDEWFKIGVKDDDAADFLERAAEQIRRHREEFDRRFKEKQGKIT
QGDDLAPGVLKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSMIVPVEDMPFSADGRPVDIV
LNPLGVPSRMNIGQILEVHLGWAAKGLGHKIEAMIAANEKASELRKFLDQIYNHDKEAFG
GERVKLKEFNDDELLAMAKNLTKGVPMATPVFDGAFEEEIKHMLQLAGLPSSGQTILIDG
RTGEAFDRPVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVPGRNQMYKNIVDGNHEMVAGMPESFNVLVKEIRSLAI
NIELEESK
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgacctactcgttcacccaaaagaagcgtatccgcaaggatttcggcaagcgccccgcg
gtgcttgacgttcctttcctgctggcgatccaggtggattcctaccgggaattcctgcag
ctggagtccggcggtatcacggcgcgcgaagacaaaggcctgcatgccgcgctgaagtcg
gtgttcccgatcgtcagctattccggcaacgcggcgctcgagtacgtcagctatcgcctc
ggtgaacctccgttcgacgagcgcgagtgccgccagcgcggcatgagctacggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgatcgcgagagcccggccagcaacaaggcc
atcaagtacgtgaaggaacaggaagtctacatgggcgaactgccgctcatgaccgagacc
ggtaccttcatcgtcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgttctccc
ggcgtgttcttcgatcacgaccgcggcaagacgcacagctcgggcaagctgctgttctcg
gcgcgcgtcattccgtaccgtggttcctggctcgacttcgagttcgatccgaaggacgcg
ctgttcacccgtatcgaccgtcgccgcaagctgccggtgacggtgctgctgcgtgcgctt
ggctacagcaacgccgagatgctcgatctgttcttcgaaaagaacgtcttcaacctgggc
aagcagggcggcgccgagctcgagctggtggccgaacgcctgcgcggtgagacgctgaac
ttcgatctgcgcgtcggcgagaaggtcgtcgtcgaggcgggcaagcgtattaccgcccgt
cacgtgcgtgagctgcagaaggaaaagatcgaatcgctggaagtgccggacgactacctg
ctcggtcgcatcctggcgcacgacgtcatcgacaccaagacgggcgaactgctcgcgctg
gccaatgacgaactcaacgaaacctcgctggagaagttccgcaagggcggcgtcgacaag
atcgccactctgtgggtgaacgatctcgatcgtggtccgtacatctcgaccacgctgcgc
atcgactcgaccaagaccccgctcgaagcgctggtcgaaatctaccgcatgatgcgtccg
ggcgagccgccgaccaaggaagcggcgcagaacctcttctacaacctgttcttcacgttc
gagcgctacgacctcgatcgcgtcggtcgcatgaagttcaaccgccgggtcggccgcaag
gacgacgtcggtccgggcatcctgtacgaccacaagtacctgtccgagcgcaatgacgac
gagtccaagcgcctggtcaaggaactgggccagacctccgacatcctcgacgtcattcgt
accctttgcgaaatccgcaacggtcgcggcgtcgtggacgatatcgaccacctgggcaac
cgtcgcgtgcgttcggtcggcgaaatggccgagaacgtcttccgcatcggcctggtgcgc
gtcgagcgcgcggtgaaggagcgcctgtccctggccgaatccgagggcctgaccccgcag
gaactgatcaacgccaagcctgtcgcggccgcgatcaaggagttcttcggctcctcgcag
ctgtcgcagttcatggaccagaacaacccgctgtcggaagtcacgcacaagcgtcgtgtg
tccgccctcggcccgggtggtctgacccgcgagcgtgccggcttcgaagtccgagacgtt
cacccgacccactacggccgcgtctgcacgatcgaaacgccggaaggtccgaacatcggc
ctgatcaactcgctcgccgtatacgcgcgcaccaatgactacggcttcctcgagacgccg
taccgccgcgtgaccgacggcaagatcaccaccgaagtcgattacctgtcggcaatcggc
gaaggtgagttcgtcatcgcgcaggccaactcgccgatgaccgaagaccgtcgcttcgtc
gacgaatacgtcgcctgccgcttccgcggcgaatcggaattacgccttgccagcgacgtc
cactacatggacgtctcgccgatgcagaccgtgtcggtcgctgcggcgctcgtgccgttc
ctggagcacgacgacgcgaaccgcgcgctcatgggcgccaacatgcaacgccaggccgtc
ccgacgctgcgtgccgagaagccgctggtcggcaccggcatcgagcgtgccgtggcgcgt
gactcgggcgtgctcgtgctcgcccgtcgcggcggcatcatcgaccaggtcgatgcgggc
cgtatcgtcgtgcgtgcgcacgaagaggaagtcgacgacaacgacgctggcgtcgatatc
tacacgctgaccaagtacacgcgttcgaaccagaacacgtgtatgaatcagcgcccgctg
gtgaaggtgggtgacgtcgtcgccaagggcgatgccctggccgacggtccgtcgaccgac
atcggcgagctggctctcggccagaacatgctggtcgcgttcatgccgtggaacggctac
aacttcgaagactcgatcctcatctccgagcgcgtcgtcgaggaagaccgctacaccacg
atccatatcgaagagctcacctgcgtcgcgcgcgacaccaagctcggtccggaagaaatc
acggctgacatcccgaacgtcggcgaacaggcgctgtcgcgcctggacgaaagcggcgtc
gtgtacatcggcgcggaagtgaaggccggagacatcctggtcggtaaggtcacgccgaag
ggtgagtcgcagctgactccggaagaaaagctcctccgtgcgatcttcggcgagaaggcc
tcggacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcactgtcatcgac
gtgcaggtcttcacgcgtgatggtatcgagaaggacaagcgcgcccgccagatcgaggaa
atggaagtcaagcgcgtcaagaaggactttgacgaccagttccgtatcctggaaagcgcc
atctatgcgcgtctgcgttcggccctggtcggcaaggtggccaaccacggcccgaacaat
ctcaagaagggttcggagctcaccaacgaatacctcgatgagctgaagaaggacgagtgg
ttcaagatcggcgtgaaggacgacgacgcggctgacttcctcgagcgtgccgcggagcag
atccgtcgtcaccgcgaagagttcgaccgtcgcttcaaggagaagcagggcaagatcacc
cagggcgacgatctcgctccgggcgtgctcaagatggtcaaggtctacctggccgtgaag
cgccgcatccagccgggcgacaagatggccggtcgccacggtaacaagggtgtcgtgtcg
atgatcgtgccggtcgaggacatgccgttctctgccgacggccgtccggtcgacatcgtg
ctgaacccgctgggcgtgccgtcgcgtatgaacatcggccagattctcgaagttcacctc
gggtgggcggcgaagggtcttggccacaagatcgaggcgatgatcgcggccaacgagaag
gcatcggaactgcgcaagttcctggaccagatctacaaccacgacaaggaggccttcggt
ggcgagcgcgtcaagttgaaggaattcaacgacgacgaattgctggcgatggccaagaac
ctgaccaagggcgtgccgatggcgacgccggtcttcgacggcgcgttcgaagaagaaatc
aagcacatgctgcagctcgcggggctgccgtcgtcgggtcagacgatcctgatcgacggc
cgtacaggcgaagccttcgaccgtccggtcaccgtcggctacatgcacatgctgaagctg
aaccacctggtcgacgacaagatgcacgcgcgttccaccggtccgtactcgctcgtcacg
cagcagccgctgggcggcaaggcccagttcggtggccagcgcttcggtgaaatggaagtg
tgggcgctggaagcctacggcgcggcgtacacgctgcaggaaatgctgacggtcaagtcc
gacgacgtgccgggccgcaaccagatgtacaagaacatcgtcgacggcaaccacgagatg
gttgcgggcatgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctcgccatc
aacatcgagctggaagagtcgaagtaa
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integrated database retrieval system
