Tahibacter amnicola: N4264_24390
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Entry
N4264_24390 CDS
T09840
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tamn
Tahibacter amnicola
Brite
KEGG Orthology (KO) [BR:
tamn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tamn03016
]
N4264_24390
Enzymes [BR:
tamn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N4264_24390
Transfer RNA biogenesis [BR:
tamn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N4264_24390
Prokaryotic type
tRNA splicing ligases
N4264_24390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UXI67835
UniProt:
A0ABY6BFF6
LinkDB
All DBs
Position
6151947..6153170
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AA seq
407 aa
AA seq
DB search
MTTNANYNVIQEGGAPIKAWTQGVPLEEAARQQLINMSRLPFIHRWIAVMPDVHLGKGAT
VGSVVPTVGAIVPAAVGVDIGCGMMAYQTTLTAAQLPDNLGAIRSAIERAVPHGFVTVQG
RSNNGAWIAPPNSAVTRWRNLQERYDLLVEKHPKVAHKSPLNQLGSLGGGNHFIELCLDE
KDQVWIMLHSGSRGAGNAIGCYFIEKAREEMRRHYVNLPDRDLAYLAEGSTLFEDYVNAV
DWAQEYAAENRQQMMDTIVRVLREHLPAFTLTRMAINCHHNYISREHHFGKDVFVTRKGA
VSAKEGQYGIIPGSMGAKSFIVRGRGNAESFHSCSHGAGRVMSRTAAKKLISLQDHVRAT
AHVECRKDAAVVDESPAAYKPIEAVMKAQEDLVEIIHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaacgccaactacaacgtcattcaggaaggcggcgcgcccatcaaggcctgg
acgcagggagtacccctggaagaggccgcccggcagcagctgatcaacatgtcgcgcctg
ccgtttattcaccgatggatcgccgtgatgccggacgtacacctgggcaagggcgcgacg
gtcggttccgtggtgccgaccgtgggcgcgatcgttccggcggccgtcggcgtggatatc
ggctgcggcatgatggcctaccagaccacgctgacagcggcacagctgccggacaatctc
ggcgcgatccgcagtgcgatcgagcgcgcggttccgcacggtttcgtcaccgtgcagggc
cgcagcaataacggtgcatggatcgcgccgcccaactcggccgtgacgcgctggcgcaat
ctgcaggagcgctacgacctgctggtcgagaagcatccgaaagtcgcacacaagtcgccg
ctgaaccagctcggctcgctcggtggtggcaaccacttcatcgagctgtgcctggacgag
aaggaccaggtctggatcatgctgcactcgggttcgcgcggtgcgggtaatgcgatcgga
tgctacttcatcgagaaggcgcgcgaggaaatgcggcgtcactatgtcaacctgcccgac
cgtgacctggcttacctcgccgaaggcagcacgctgttcgaggactacgtcaacgccgtc
gactgggcgcaggagtacgccgccgaaaaccggcagcagatgatggacacgatcgtccgc
gtactgcgcgagcacctgcccgccttcacgctgacgcgcatggcgatcaactgccaccac
aactacatcagccgcgagcatcacttcggcaaggatgtctttgtgacccgcaagggtgcg
gtcagcgccaaggaaggccagtacggcatcattcccggcagcatgggtgccaagagcttc
atcgtgcgcggccgcggtaacgccgagagcttccatagctgcagccacggggccggacgc
gtgatgagccgtacggcggcaaagaagctgatcagcctgcaggatcacgtccgcgccacc
gcgcacgtggaatgccgcaaggacgccgcggtggtcgacgaatcgcccgccgcctacaag
ccgatcgaagcggtgatgaaggcccaggaagatctcgtcgagatcatccatacgcttcgc
caggtggtgtgcgtgaagggctga
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