Theileria annulata: TA05230
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Entry
TA05230 CDS
T00253
Name
(RefSeq) cleavage and polyadenylation specificty factor, subunit, putative
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tan
Theileria annulata
Pathway
tan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TA05230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tan03021
]
TA05230
03019 Messenger RNA biogenesis [BR:
tan03019
]
TA05230
Transcription machinery [BR:
tan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TA05230
Messenger RNA biogenesis [BR:
tan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TA05230
U7-dependent histone pre-mRNA processing factors
TA05230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B_6
RMMBL
Lactamase_B
CPSF73-100_C
Anti-Pycsar_Apyc1
Lactamase_B_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
3864572
NCBI-ProteinID:
XP_955255
UniProt:
Q4UBM2
LinkDB
All DBs
Position
3:<1228184..>1233454
Genome browser
AA seq
1282 aa
AA seq
DB search
MDDRVRITVLGAGCEVGRSCVYVERDNSCLMFDCGLHPALSGVGALPVFEAVDISKVEVC
LVTHFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFDDDD
GMDELVCGSGLYSFEDVEYALDRIETIDFHQEITVNDIKISCYRAGHVLGACMFLVEIDG
VRILYTGDYSVEKDKHLPSAEIPSTNVHLLISESTYGIRVHEERSQREMRFLHVVMDIIM
REGKCLLPVFALGRSQEILLILDNYWENNRQLHNVPIFYISPLASKSLRVYETFVGQCGD
YIKQSVYNGFNPFDFKFVKYARSIKQIRNYLLRDGPCIIMTSPGMLQGGPSLEVFELICP
DNRNGVVLTGYTVKGTLADELKKDPEFINLGNKVVKPRCSVEQISFSAHADYNQTKDFIK
KLSVPNVILVHGERNEMKRMKDKLEEDIRQLTVFMPEVLQEITLTFTPQRFVDAVGSLSS
NLHELSNTITNDVNSVSTNTKDINGINGDSLEHVDELLSGVLVKNTDVRLLYSDDVKEFS
KLPVSSLNQKMTFTFPHKLEHLVKVLKSVYEQVDLKSENEAVVLNHVTSGPVSDLIVDSI
ILMAIDLITSCDNLMEEVKFRSNLSVEDSFLKSAEIQLVQKFGNPIEKNDSILQYKLQDD
GFKEVDLTINLGLREMFYVFLKKSILGARLWIWVFSAFIWPINSYIMDLSKISNTGNDIW
TFLCDFPTLSSGSEELLVPPYYFSLESGGRLHGYIKIATIEEIDDDLVLPNTPNTIHTND
TPVATTTNDVNTTNTIATNTNIGKGTSTVLLDNMLQFNRLKRKAKRPLFSISLRNRNRST
NTFTNHHSFLHLIQTIYHSIKHRNNNNNTLPDNVNTTNEKDSNKDITPPVTPPNTNPTTE
KGTNTLTTTSTTSDTPHDLDEELIVDNAYLILFSQSQWQLYLSNGPYDVVQPSRNGRGYV
YFSNVISKLRIPITKVGDTVTFQYVSDQPDRYILLLFNPDQRRMTLEGYVRFENLNSYNL
PLEMKYHFQIFTLWFFIYLFSFIISALYLYFFVESNVKKVNYCLSLNYLLYTTFLLLDLV
IIYIVRLSDRVPKYIWAFSHIFKRLHEIYILTLLVLLSLGWRILRDSLSSIEVQLISSIS
LVCILMGFVEVAVSGFDISRYLVHAIACICILMATNFNIVLINTRIVDEGLTPQAGVAYQ
HMKIFSNFRILFFVYMFKPAIFSLIRFVCLQPTLDQVIIWDQHLNLFIDLVFDFTVYTLL
FFNFIPKDKGLFNHIFQNTTSD
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagagtgagaataactgtattaggagccggttgtgaagttggcagatcatgt
gtgtatgttgaacgtgataactcatgtttaatgtttgactgtggtttgcatccggctctt
tctggtgtcggagcacttccagtgtttgaggctgtggatatttcgaaggttgaagtctgt
ttggtgacacactttcacctcgaccattgcggcgcagttccctacctacttagtaaaacg
aagttcaacggtagaattctcatgacacccgcaaccaaatccatatgtcatctactttgg
actgattatgcaagaatggaacaactgttaaccgttaaaactatttttgatgatgatgat
ggtatggatgaactggtatgtggttctggattatattcattcgaggatgttgaatatgct
ttggaccggattgaaactatagattttcatcaggaaattactgtgaatgatataaagata
tcgtgttacagagcggggcacgtgttgggtgcttgtatgttcttggtggaaattgatggt
gttcgtatactatacactggggactattctgtggaaaaggataaacacttgcccagtgct
gaaattccctccactaatgttcacttgttaatatctgagagcacttacggaattcgtgta
catgaggaacgaagtcagcgggaaatgagatttcttcatgtcgttatggacataataatg
cgagaaggtaaatgtcttttgccagtttttgccctcggaagatcacaggaaattttacta
attctggacaattattgggaaaataatagacaattacataatgttccgatcttttatatc
tcacctcttgcttccaaatcattaagagtttatgagacctttgtaggacaatgtggagat
tatattaaacagagtgtgtataatggatttaatccgtttgattttaagtttgtaaaatat
gcgagatcaattaagcaaattcgtaactatttactacgcgatggaccatgtataataatg
acatcgcctggaatgttacagggaggtccatcacttgaggtttttgagcttatctgtcct
gataaccgtaatggtgttgttcttactggatatactgttaagggaactcttgctgatgaa
cttaaaaaggatcctgaatttattaatctaggaaataaagttgttaagcccagatgtagt
gttgagcagatatcattcagtgctcacgctgattataatcaaacgaaggactttatcaaa
aagttatcagtcccaaatgtgattttagttcatggtgaacgtaatgaaatgaaacgtatg
aaagataaattagaggaggatatacgacaattaacagtattcatgcctgaagtattacaa
gagattacactgacatttactccccagcgttttgtcgatgccgtcggatcactctcatcc
aacttacacgaactttccaataccatcactaatgatgttaatagtgttagtactaatact
aaggatattaatggtattaatggtgacagtcttgaacatgttgatgagttattgtctgga
gttcttgtgaagaatacagatgtacgtcttctgtatagtgatgacgttaaggagttcagt
aaacttccagtaagctctttgaatcaaaaaatgacttttacattcccacataaattggaa
cacttggtaaaagttctcaagtcagtttatgaacaagttgatttaaaatctgaaaatgaa
gccgttgttctaaaccatgtcacatctggaccagtatctgatttgatagtggatagtata
attttaatggcaatagacttgataacgagttgtgataacctgatggaagaggtgaagttt
agaagtaatttgagcgttgaggattcgtttttgaagtcagctgagatacaattggtgcaa
aagtttggaaatcctattgaaaagaacgatagcattttacagtataaattgcaagatgat
ggatttaaagaggttgatttaacaattaatctaggattaagagagatgttttatgttttc
ctgaaaaaatccattttaggcgcccggctttggatttgggttttttctgcctttatttgg
cctataaactcttatattatggacctctctaaaatttctaatactggaaatgatatttgg
acttttctttgtgactttccaactctttcttcaggttctgaagaacttctcgttccacct
tattatttttcattagaatctggaggtcgattacatggttatattaaaatcgcaaccatt
gaagagattgacgatgatttagttcttccaaatactcctaatactattcatactaacgat
actcctgttgctaccaccactaatgatgttaataccactaacactattgctactaatact
aatattggtaaaggaactagtaccgtattattggataatatgttacaatttaacagattg
aaaaggaaggctaagaggcctttgttctctattagtttgagaaaccgaaacaggtccacc
aatactttcactaaccatcattcatttctacacctcattcaaaccatatatcattccatt
aaacatcgcaataataataataatacactaccagacaatgtaaatacaactaatgaaaaa
gattccaataaggatattactccacctgttactcctccaaatactaatcctactactgaa
aagggtactaataccttaactactactagtactactagtgatactccccatgatttggat
gaagaattaatagtggataatgcatacttgatattattttcacagagccaatggcagtta
tacttgtccaatgggccttacgatgttgttcaaccatcacgtaatggcagaggttacgtt
tacttcagtaatgtgatatctaagttgaggatcccaattactaaggttggagatacagtc
acttttcaatacgtatctgaccaaccagaccgttacatactactgctttttaatcctgat
cagcgtaggatgacacttgaaggttatgtacgatttgaaaacctgaactcttataatcta
ccattggaaatgaagtatcactttcaaatctttaccctttggtttttcatctacctgttc
tcatttatcatttcagccctctacctatattttttcgtagaatctaatgttaagaaggtt
aactactgcctctcactcaattacttactctacaccactttcctcttattggacttggtg
attatatacatagtccgcttgagtgatagggttccaaaatacatttgggcctttagtcac
atcttcaagcgtctccacgagatttatattctaactcttttagtgttattatcccttggt
tggagaattctcagagattccttaagctcaattgaagtccagctgatcagttcaatatcc
ttagtatgtattttaatgggttttgtggaggttgctgtaagcggttttgatattagccga
tacctagtccatgccatcgcatgcatatgtatattaatggccaccaacttcaatattgtt
ttaataaatacaagaattgtagatgagggattaacgccccaggcaggcgtagcttatcaa
cacatgaaaatattctcaaacttccgtatactcttctttgtctacatgttcaaacctgcc
attttctcactcattaggtttgtatgtcttcaacccaccctcgatcaagtgattatttgg
gatcaacacttgaacctctttattgatttagttttcgatttcacggtttacactctactc
ttttttaatttcattccaaaggataagggattattcaatcacatttttcaaaataccacc
agtgactaa
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