Typha angustifolia (narrow-leaf cattail): 140758033
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Entry
140758033 CDS
T11061
Name
(RefSeq) RNA polymerase sigma factor SigE, chloroplastic/mitochondrial-like
KO
K03093
RNA polymerase sigma-I factor
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140758033
Transcription machinery [BR:
tang03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
140758033
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
140758033
NCBI-ProteinID:
XP_072950109
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Position
1:complement(join(1939952..1940146,1940389..1940652,1940805..1941041,1941863..1942009,1942319..1943041))
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AA seq
521 aa
AA seq
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MGSATVPSSAPPAAFVGVRRSPPLPRSFFFLSFDSNRPTKCLALVSPSEAVKEPQKSLTR
AVKQPKRVKAVSIDAAPTAASPSSSPSSDSCDLNYNEVAAVLENIYKLSPAEISDAEDIG
GDRRRRRTGRGRKRVEEEEEEESRIGDVCNISVVRSRRRRSKRLSLEKRVALRKRRKEEE
GVAVAISGEKKELGEDVVERLVREHSVSTDLTSLDWKKMKIPPVLSSSEHTRLFKLMQQM
KAILELKENLHKDLNREPTDGELAGAMNISVMQLRQQLEIGRAARNKLIKHNLRLVLFVI
NKYYPDIASGPKFQDLCQAGAKGLITAIDRFETKRGFRLSTYGLFWIRHSITRSMIISSL
TRFPFGIESVRQVIQKAKLELSFELERPPSEEEIIDRVRISPERYFYVLKAGKPVLSLNA
KHSVTQEEFINGITDVDGTGGDKCRQPALLRLALDDVLDSLKPKESVVIRQRYGLDGKGN
RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYF
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgggatcggctaccgtaccgagctcggccccaccggctgcgttcgtcggcgtccgccga
tcgccgcctctcccgcggtcatttttcttcttatccttcgactctaataggcccaccaaa
tgtttggccttggtctcgccgtcggaagccgtgaaagaacctcagaagagcctcacgaga
gctgttaagcagccaaagagagtcaaggccgtctccatcgacgccgctcccaccgcggct
tccccttcctcctctccttcctcggactcttgcgatttgaattacaatgaggttgccgcg
gtgctcgagaacatctacaagctcagccctgcagagatttcggacgcggaggacatcggc
ggggatcgaagaaggaggcggacgggtcgggggaggaagagggtggaagaagaggaggag
gaggagagtcgaattggggatgtgtgtaatattagtgtggtgaggagtaggaggaggaga
tcgaaaaggttgagccttgagaagagggtggctttgaggaagaggagaaaggaggaggaa
ggggtggcagtcgcaataagcggtgaaaagaaggagcttggtgaggatgtggtggagagg
ctcgtaagggagcattcagtgtcgacagacttgactagcttggactggaagaagatgaag
ataccgccagtgcttagttcatcggagcacactcgattgttcaagctgatgcagcagatg
aaggcaatacttgaattgaaggagaacttgcacaaagatctaaatagagaacctacggat
ggagaattggcgggtgcaatgaatattagtgtcatgcaattaagacaacagttagagatc
ggtcgagcagcaaggaacaaattaataaagcacaacctgcgcctagttttatttgtcatc
aacaagtactatccagacattgcaagtggcccgaagttccaagacctctgccaagctggt
gctaaaggtcttattacagccattgaccggtttgaaacaaagcgagggtttcgcctatcc
acatatggcctattttggatccggcattctattactcggtcaatgataatttcaagttta
acacggtttccctttggaattgaatcggtcagacaagtaatccagaaggccaaattagag
ttgtcatttgaacttgagagacctccctctgaggaggagatcattgacagagtaagaata
tcaccagaaagatatttctatgtcctaaaggcaggaaaaccagttttgtcccttaatgca
aagcactcagttacacaagaagaatttatcaacgggatcactgatgtcgacggtactgga
ggtgataaatgtagacagcctgcacttctccgacttgctcttgatgatgtgctagattca
ctaaagcccaaggagagtgtcgtaatcaggcagagatatggactcgacggcaagggcaac
agaacactgggtgagatcgcaggaaatctgaatatctcaagagagatggtccgcaagcac
gaagtgaaggcactcatgaagctcaaacacccagctcgtgttgattatctgcgacgatac
ttctga
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