Typha angustifolia (narrow-leaf cattail): 140758095
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Entry
140758095 CDS
T11061
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140758095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140758095
03036 Chromosome and associated proteins [BR:
tang03036
]
140758095
Transcription machinery [BR:
tang03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140758095
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140758095
PBAF complex
140758095
GBAF(ncBAF) complex
140758095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Band_3_cyto
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
140758095
NCBI-ProteinID:
XP_072950224
LinkDB
All DBs
Position
3:complement(join(7604910..7605374,7605902..7606071,7606173..7606237,7606514..7606602,7607639..7607712,7607815..7608169,7608799..7609361,7609445..7609978,7610080..7610158))
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AA seq
797 aa
AA seq
DB search
MPRKTPPLRPPPDSTMSPASSSLPSSDSRLKWRKRKRESNPKRPKLPQAGSDDDPDSDND
AGAGDDEDELAGDAPADSPSGAGADPVLDLRESEVLSDAGHRISVFPAAVRRAVNRPHPS
VLSIVAAERFPRSFSSSHTPFLENISHGQLQALSSVLPDHPSLLQPPELDKPSAYVCTPP
PLMEGKGVPKRFSPDQLLLVPMHSDWFSPNTVHRMERQVVPHFFSGKSSDHTPGKYITLR
NKIISKYLENSGRRLVFADCQGLVSSNSELYDLSRIVRFLDHWGIINYLATASVHRGLRM
AATLLREDAGGELQIVTAPLKSIDSLILFDRPKCSLRTEDVALLSSSTSSGSMDPDAGLS
DLDSRIRERLSEYACSYCSQPLPDLHYQSQKETDIILCTDCFHDAKYITGHSSLDFMRVD
SKKDTSDLDGDSWTDQETFLLLEAIEKYNDNWNEIAEHVGTKSKAQCILHFIRLPVEDGL
LENIEPPHVAVSSKGQEPVFPCLNSNGDTSGVHLDDIHSGSQLPFANSANPVMSLVAFLA
SAIGPRVAASCANAALSVLTRSDSRSSSEGMHADVGNHGAHAKNQNDDILPYARRETSSS
LPLERVKFAAVCGLSAAAMKGKLFADQEEREIQRLAATIINHQLKRLELKLKQFAEVETL
LLKECEQVERMRQRLSAERVRMMSTRLGAAVNTLPAAAATAAAVVNTNTRQPAMPGTVGQ
TNISPAYGNNMQGHPQMSFMQQQQMLSFGPRLPLSAIHPTLSPSSANAVFNTGMPNTVTP
NHHPLLRSASGNNSTIG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggaaaacgccacctctccgcccgcctcccgactccactatgtcacccgcctcc
tcctccctcccttcctcagattcccgcctcaaatggcgaaagcggaagcgcgagtccaac
cccaagcgtcccaagctcccccaggccggttccgacgacgaccccgactccgacaacgac
gccggcgccggcgacgatgaagatgaactcgccggagacgccccggctgactccccatcc
ggtgccggagcagaccccgttctcgacctccgtgaatccgaggtcctctccgacgccgga
catcggatctccgtcttccccgctgccgtccgccgtgccgtcaaccgcccccacccttct
gtcctctccatcgtcgccgctgagcgatttcctcgctccttctcttcttctcacactccc
ttcctcgaaaacatctcccacgggcagctccaagccctctcctccgtgctccccgaccac
ccttccttgctccagccgcccgagctcgacaagccctccgcttacgtctgcactcctcct
cccctcatggaagggaagggcgtccccaagcgcttctcccccgaccaactcctcctcgtt
ccgatgcactccgattggttctcgcccaatacggtgcacagaatggagcggcaggtagtg
ccacacttcttctctgggaagtccagcgaccacacgccaggaaagtatatcactctccgg
aacaagataatttcaaagtacctggagaattctggaaggaggctggtgtttgcggactgc
caagggcttgtttcgagcaatagtgagctctatgacctcagcagaattgtgcggtttctg
gaccactgggggattatcaattatcttgcgactgcttctgtgcatcgggggcttagaatg
gcagcaactcttcttagggaggatgcgggtggagagcttcagattgtgacggcaccgctg
aagtctatcgatagtttgatattgtttgataggcctaaatgtagcctgaggacagaagat
gttgctctgctgtcgtcttctacttcttctggatccatggatccggacgctggactctct
gatctggatagcaggataagggagcgtctatcggaatatgcctgcagttactgctcacaa
cctcttcctgacttgcactatcagtctcaaaaggagacagacatcattctctgtactgat
tgcttccatgatgcgaaatatattaccgggcactcgagtttagattttatgagagtggat
tcaaagaaggatacatcagatcttgatggagatagctggactgatcaggaaacttttctg
ctgttagaagccatagaaaagtacaatgataactggaatgaaattgcagagcatgttggc
accaagtcaaaggcacaatgtattctccattttattcgtcttcccgttgaggacggttta
ttggaaaatattgaacctcctcatgtagctgtttcctcaaaagggcaagagcctgtattt
ccatgcttgaattctaatggtgatacttcaggagttcatctggatgatattcattctgga
agccagcttccatttgctaattctgcaaatccagttatgtccctggttgcttttttggcc
tctgcaatcggaccaagagttgcagcatcctgtgcaaatgctgcattatctgtcttgaca
aggtccgattccaggtcgagttcagagggcatgcatgctgatgttggtaatcatggagca
catgcaaaaaatcaaaatgatgatatactaccttatgctagaagagaaacgtcctcttct
cttcctttggaacgggtaaaatttgctgcagtgtgtggtttatctgctgctgcaatgaag
ggaaaactgtttgcagatcaggaagagcgtgaaattcagagactagctgccactatcatt
aatcatcagttaaagagattggagctaaagcttaaacagttcgcagaggtggaaactttg
ctgctgaaggaatgtgaacaggtagagagaatgagacagcggctttctgctgaacgggtt
cgaatgatgtcaacccggttaggagctgcagtaaacactctaccagctgctgcagccaca
gctgcagcagttgtgaacactaacactagacagccggctatgcccggcactgtcgggcag
acaaacatctcacctgcttatggtaataatatgcaaggacatccccagatgtcattcatg
caacagcaacagatgctctccttcggacctcggttacctctctctgcgatccatccaacg
ctgtctccctcctccgctaacgccgtgtttaataccggtatgcctaacactgtgacccct
aatcatcatccattgttgagatctgcatctggaaacaattcaactataggctga
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