KEGG   Typha angustifolia (narrow-leaf cattail): 140758117
Entry
140758117         CDS       T11061                                 
Name
(RefSeq) splicing factor U2af small subunit B-like
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140758117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tang03041]
    140758117
Spliceosome [BR:tang03041]
 Complex A
  U2 snRNP components
   U2 related factors
    140758117
 Complex B
    140758117
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 HATPase_c Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 140758117
NCBI-ProteinID: XP_072950258
LinkDB
Position
1:complement(join(3956517..3956910,3956991..3957117,3957257..3957338,3957432..3957518,3959790..3960026))
AA seq 308 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLCLSNMYQRPDMITP
GVDPQGQAMDPRKIQQHFEDFYEDLFEELSKYGELESLNICDNLADHMVGNVYVQFREEE
HAANALRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISREL
RRQLFGRYRRRHSRSRSPQRHRGYEDRPHGGRGYGRQHDDRDRHHEERGRRPRSRSPGHK
RGRSRSPGGRRNRSPVREGSAERRAKIEQWNREREQAESANKNNHSDNRAAEHDGPYNDQ
SEQNGGGY
NT seq 927 nt   +upstreamnt  +downstreamnt
atggcggagcacctggcctcgatctttggcacggagaaggatcgcgtcaactgtcccttc
tacttcaagattggtgcttgccgccacggcgatcgatgctctcgtctgcacacgaagccc
agcatcagccccaccctttgcctctccaacatgtaccagaggcccgatatgatcacccct
ggagttgacccccagggccaggctatggatcctcgcaagatccagcagcacttcgaggac
ttctatgaagatctatttgaggagctcagtaagtatggcgaacttgagagcctgaatatc
tgcgacaatctcgctgaccatatggttggtaatgtatatgttcagtttagagaagaagaa
catgctgctaatgctctccggaatttgacagggcgattctatgcaggacgcccaattatc
gttgatttctctccagttactgatttccgtgaggctacatgtaggcagtatgaagagaac
acttgtaatcgaggtggctattgcaatttcatgcatttgaaaaagattagcagggaattg
aggcggcaactatttggtagatatcggcggaggcatagcagaagccgcagtccccagagg
caccgcggttatgaagaccgcccacatggtggccgtggttatggaagacaacatgatgac
agggataggcatcatgaagaacgaggaagaaggcctaggagccgaagtccggggcataag
aggggtcgtagcagaagccctggagggagaaggaacaggagcccagttagagagggtagt
gctgaaaggagagccaaaattgagcaatggaacagggaaagagaacaggcagaatctgct
aacaagaataatcactctgataaccgggctgctgaacatgatggaccatacaatgaccag
tctgagcagaatggaggaggatattaa

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