KEGG   Typha angustifolia (narrow-leaf cattail): 140758611
Entry
140758611         CDS       T11061                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12830  splicing factor 3B subunit 3
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140758611
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tang03021]
    140758611
   03041 Spliceosome [BR:tang03041]
    140758611
   03036 Chromosome and associated proteins [BR:tang03036]
    140758611
Transcription machinery [BR:tang03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     140758611
Spliceosome [BR:tang03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    140758611
 Complex B
    140758611
 Complex C
   U2 SnRNP specific factors
    140758611
Chromosome and associated proteins [BR:tang03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     140758611
    TFTC complex
     140758611
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 140758611
NCBI-ProteinID: XP_072950937
LinkDB
Position
4:complement(join(2563372..2563566,2564115..2564229,2565482..2565621,2566633..2566709,2568175..2568316,2568429..2568584,2568775..2569093,2569682..2569992,2571077..2572982,2573142..2573299,2573426..2573513,2574074..2574157,2574320..2574399,2574575..2574709,2575631..2575801))
AA seq 1358 aa
MVMDEEDAGPPIQLPPRPSSGGGTHYLAKCVLKGSAVLHAVHGHFRSPSSFDVVFGKETS
LELVLIGEDGVVQSICEQTLFGIIKDLAVLRWSDRFHESMLQAQGKDILVVLSDSGKLSF
LAFCSEMHRFFAVTHVELSKPGNYRHLLGRMLAVDPEGCYIAVSAQEDRFAIFSVALTSS
SNIIDEKICYPPENEEDNLRDTSKTIVRGTIWSMCFISCGINHFSREGYNPVLAVVMHRK
GCIANDLLLFGCNPRTHAIQVISRYSESGPLALNISAVPHFSGFAFLFRLGDVLLMDLRD
PEHICSIHRISLNSPSVVEERNSVEDPCRGSDVDDEGMFNVAACALLELRDSADEMVKDD
DPMNIDSGDDKGLSSSRLVCSWNWEPAKSTSSKMIFCLNTGELFIMEINFDVEGIRVNLS
ECLYRGLPCRAVLWAKGGLIAGLVEMGDGMVLKLVHGKLVYKNSIQNIAPILDISIADYH
DEKQDQIFACCGMSPEGSLRIIRSGISVEKLLRTASIYVGVAGIWTLRMKETDIHHSFLV
LSFVEETRVLSVGLSFNDVSDAVGFQPDVCTLACGLMADGLLVQIHNRGVRLCLPTTFAH
PDGAPFSVPICTSWCPDKVTIIVGAVGHELVIVATSSPCILYILGVRLLSAYHYELYEIR
HMKLLDEVSCISIPREGVKLGPLASKLSANNDHRTSIPHKNKVGKIVVIGTHKPSVEILS
LEHDEPYSVGVLAVGLISINNAFGCPISGCIPEDVRLVSIDRSYILSGLRNGMLLRFEWP
ALSAISQSEESMPVFLELIAVRRIGISPVVLVPLQDSPDADIIVLSDRPWLLHSARHSLA
YSSISFQQATHVTPVSSVDCPMGILFVAENSLNLVEMVHNKRLNVQKFSIAGTPREVLYH
SKSKTLLVRRTQQCGASISSDICRVDPLSGFVLSKFKCDPGESAKCMQIVRVGNEQVLIV
GTSQSAGQIIMPSGEAEGSGKGRIIVLSLETAQISSESSSVYCSNLSSASQIGSPFREIV
GYATEQLSNSSLCSSPDDIFCDRIQLEEMGAGHLRPLFQTTLSGAVVSVCPYLDRYILAS
AGNMLNVFGFVNENPHRLRKFAMTRTRFTITCLRTHFTRIAVGDCRDGILFYSYNEELRK
LEQMYSDPARRLVADCALMDCQTAVVSDRFGIISVLSCPDNFEANESPEKNLKINCSFYM
GEVAMSIQKASFSYKLPVDDLMNSCNGVERILDSAYNSVVASTLLGSVMILIPITSEEHQ
LLEAVQARLAIHPLTSPVLGNDHKEFRGRGVPARAGVPTILDGDMLVQFLELTSIQQEAV
LALSGIPSNKIPALGVQHTPISVNHVVRVLERVHYALN
NT seq 4077 nt   +upstreamnt  +downstreamnt
atggtgatggacgaggaggacgcggggccaccgatccagctcccgccgcgaccctccagc
gggggcggaactcactaccttgccaagtgcgtcctcaagggtagcgccgtcctccacgcc
gtccacggccatttccgctcaccctcatccttcgacgtcgtcttcggaaaggagacatct
ctagagttagtacttattggtgaagatggagtggtacaatcaatctgcgaacaaacttta
tttgggattataaaagatcttgctgtcctgcgatggagtgatagatttcatgagtccatg
ctgcaggcacagggaaaagatatactagttgttctttcagattccgggaagctttctttt
cttgccttttgttctgagatgcacaggttctttgctgtgacacatgttgagctatcaaaa
ccaggaaactatagacatctattgggaagaatgctagctgttgatccagaaggctgctac
attgctgttagtgcacaggaggatcgatttgccatattttctgtagctctgacttctagc
agcaacattattgatgagaaaatctgttatccaccagaaaacgaagaagataatctaagg
gatacatctaagaccattgtccgtggcacaatttggagcatgtgctttatttcatgtggc
attaatcatttcagcagagaagggtacaatcctgtactggctgttgtaatgcacaggaaa
ggttgtatcgcaaatgacttgttattgtttggatgcaaccctaggactcatgctattcaa
gttatatctcggtactcagagtctggacctttggcacttaatatatctgcagtacctcat
ttttctggctttgcatttcttttccgtcttggcgatgtgcttctgatggatcttagagac
ccagagcatatttgttccattcacaggataagcttgaattcacctagtgtagttgaagag
cgaaattctgttgaagatccatgcagaggatcagatgtagatgatgaaggtatgtttaat
gtagctgcttgtgcattgctagaattaagagattcagctgatgaaatggtgaaagatgat
gatccgatgaatattgatagtggagatgacaaagggttgtcgagttctaggcttgtttgc
tcatggaattgggagcctgccaaatcaacaagttctaagatgatcttttgtttgaacact
ggagaactttttataatggaaattaattttgatgttgaaggtatccgagttaatttgtct
gagtgcctctataggggtttgccttgcagggctgtcttatgggctaaaggtggcctaata
gctggacttgtggagatgggagatgggatggtcttgaagttggtgcatggtaagttagta
tacaaaaattccatccaaaacatagcaccgattttggatatatcaattgctgattaccat
gatgagaaacaagatcaaatatttgcctgctgtggaatgagtcctgagggatcattgagg
ataattcgaagtggcatcagtgtggaaaagctattaaggaccgcttctatatatgttgga
gtggctggtatatggacattgaggatgaaagagactgatattcatcattcttttcttgtc
ttgtcttttgtagaagaaactagagtactctcggtcggtttaagttttaatgatgtcagt
gacgctgttggttttcagcctgatgtctgcactttggcttgtggtttgatggctgatggg
ttgcttgtgcaaatccacaatagaggtgtaagactttgtttgcccactacatttgctcat
cctgatggtgctcccttctctgtgccaatctgcacctcttggtgtcctgataaagtgact
ataattgtgggtgcagttggacatgaattggttattgttgctacgtctagtccttgcatt
ctatatattcttggggtgagattgctctcagcttatcattatgagctttatgagatacga
catatgaaactgcttgatgaagtatcctgcatatctataccaagggaaggtgtcaagtta
ggtccgttagcttcaaagctcagtgctaacaatgatcacaggactagtatcccacataaa
aataaagttggtaaaattgttgtcattggtactcataagccttcagtggaaattctttca
ttggaacatgatgaaccctacagtgttggggtccttgcagttgggctaatttcaataaat
aatgcattcggatgtcctattagcggatgtatccctgaagatgttagacttgtatcaatt
gaccgatcttacatcctttcaggactgagaaatggaatgcttcttagatttgagtggcct
gcgctttctgcaatttcccaatcagaggaatctatgcctgtttttcttgaattgattgct
gtgagacgtatagggatttctcctgtagttttggtacctctgcaagattcacctgatgca
gacattattgtgctcagtgataggccttggctattgcattctgcgagacacagccttgca
tattcgtctatctcatttcagcaagccactcatgtgactccggttagctctgttgattgc
cccatgggtatcttgtttgttgccgagaacagtttaaatttggttgaaatggttcataac
aagagattgaatgtacagaagttttctatagcagggactccaagagaagttctgtatcat
agcaaaagtaaaacattattggtaaggagaacacagcaatgtggtgcatccatttcctca
gatatttgccgggtagatcctctaagtggattcgtgctttcaaagttcaagtgtgatcct
ggagaatcagcaaaatgcatgcaaatcgtaagagtaggaaatgagcaagtattgattgtt
ggaaccagtcagtctgctggacagataattatgccaagtggtgaagctgaaggcagtggc
aaggggcgcataatagttttgagcttggaaactgcacaaatttcttcagagagcagttca
gtctactgttctaatttgagttctgcttcccaaattggttctcccttccgggaaattgtc
gggtatgcaactgagcagttatcaaacagtagtctttgcagcagtccagatgatatcttc
tgtgacaggattcagcttgaagaaatgggggcaggacatttaagaccactttttcaaact
acattatcaggtgctgtggtttctgtatgcccataccttgatcgctatatcttagcatct
gctggaaatatgctcaatgtgtttggctttgtaaatgaaaatcctcatcggttgagaaag
tttgcaatgaccaggacacgatttactataacgtgcttgagaactcattttacaagaata
gctgttggtgattgtcgtgatggtatccttttctattcctataatgaggaacttaggaag
ctggagcaaatgtattctgatccggctcggagattggttgctgattgtgcacttatggat
tgccagactgctgtagtatcagaccgttttgggattatatctgttttgtcatgcccagac
aattttgaagctaatgaaagcccagaaaagaacctgaagataaattgttcattctacatg
ggagaagttgctatgagcatccagaaggcttcattttcatacaaacttccagttgatgat
ctaatgaacagctgtaatggtgtggagagaatattagattcggcctacaacagtgttgtt
gcaagcactttgctggggagtgtgatgattctgatccccattacaagtgaagaacatcaa
ttactagaggctgttcaagctagacttgcaattcatccattgacatctccggtcctggga
aatgatcacaaggaattccgtggacgtggagtacctgcacgggcaggagtacccaccata
ctggatggagacatgcttgttcagttcttggaactgactagcatacaacaagaagctgtc
cttgcattatctggcattccaagtaacaaaatcccggctttaggtgtacaacacactcct
atctcagtcaatcatgtcgtccgggttcttgaacgagttcactatgctcttaactaa

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