KEGG   Typha angustifolia (narrow-leaf cattail): 140758731
Entry
140758731         CDS       T11061                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140758731
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140758731
   03012 Translation factors [BR:tang03012]
    140758731
Enzymes [BR:tang01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     140758731
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     140758731
Translation factors [BR:tang03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    140758731
SSDB
Motif
Pfam: OB_NTP_bind R3H Helicase_C HA2_C DEAD HA2_N Ank_2 ATPase Ank_5 nSTAND3 AAA_22 AAA_19 AAA_25 ResIII PhoH Rad17 ABC_tran AAA_7 AAA_23
Other DBs
NCBI-GeneID: 140758731
NCBI-ProteinID: XP_072951101
LinkDB
Position
4:join(3859519..3859651,3861577..3861667,3863895..3864204,3864345..3864419,3867149..3867193,3868726..3868816,3868907..3868965,3869796..3869957,3873855..3873907,3874620..3874653,3874789..3874878,3874959..3875963,3876046..3877119,3877979..3878398)
AA seq 1213 aa
MGKKGQRKGKGGPPQQQQGSGGVTEASRLRIGKVLEEFRVSDGEVYTFEPGLSKQERAAI
HEMCRKMGMISKSSGYGERRRLSVFKSKRKPLPDKKDEETVTCLSFSEEARNVIRELFTH
YPPDDGELSELRNSNQKAAKVQFRQDKSFCKPSMGKSDIAKKVKLLASKINESAQLRKVV
EDRAKLPIASFKDVITSTLETQQVVLISGETGCGKTTQVPQYILDCMWSKGEACKIVCTQ
PRRISAISVAERISFERGESVGENIGYKIRLESKGGRNSSILFCTNGVLLRLLISRGSNF
SKSVHTKHFPDDGIMGITHIIVDEIHERDRFSDFMLAILRDLLPAYPHLRMVLMSATIDA
ERFSRYFSGCPIIQVPGFTYPVKTFYLEDVLSILRSTNDNHLNPTAASDLKESTTLTEDY
MSALDESINLALSNDELDPLMELVSTEQNPKIYNFQHSVSGVSPLMVFAAKGSIGDVCML
LSFGVDCSLQDNDGNSALDWAEQENQLEVYEIIKKHMENDASKSAEKEELLDKYLASINP
EHIDTVLIERLLRKICIDSEEGAILVFLPGWDDINQARERLLASPLFRDASKFVILSLHS
LIPSAEQKKVFKRPPPGVRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTL
HSSWVSKASARQREGRAGRCQAGICYHLYSKLRSSSLPDYQVPEIKRMPIEELCLQVKLL
DPDCRIADFLQKTLDPPVPETVRNAITVLQDLGALTHDEKLTDLGEKLGSLPVHPSTSKM
LLFAILINCLEPALTLACAADYREPFILPMAPDERKRAAAAKVELASLYGGYSDQLAVVA
AFECWKRAKDRGQESQFCSKYFVSSNTMNMLSNMRKQLQSELMKNGFIPEDTSGCNVNAQ
DPGILRAVLMAGAYPMVGRILPRRKNIRRAIVETTSGAKVRLHPHSSNFNLSFSRASGSP
LIIYDEITRGDGGMYIKNCSVVGPYPLLLLAMEMVVAPPDDEDDESDEDEEVSSGEEDEI
EMDTSGQIGEEIMSSPENAVSIVVDRWLRFESTALDVAQIYCLRERLSAAILFKVRYPQD
VLPSALGASMYAISCILSYDGLPTIISADEYTDPQQSMVDAAELNNYPQVRRGMGYNSPS
SFLRSLMSEKARKTSNFNKTRESVHPKTYATRLPPHAQVDRFQQQRPPSHGSSSGSTAPR
IRSMKRQRGNTPQ
NT seq 3642 nt   +upstreamnt  +downstreamnt
atggggaagaaaggtcagaggaaggggaaaggcgggccgccgcagcagcagcagggttcg
ggaggggtcacggaggcgagtcgtctccgaatcgggaaagttctcgaggaattccgcgtc
tccgacggagaagtgtacacctttgaacctggtctttcgaaacaagaacgagctgcaatt
catgaaatgtgcagaaaaatgggtatgatatcaaaaagttctgggtatggcgagcgtcga
cgtctttctgtcttcaagagtaaaaggaagcccctaccagataagaaggacgaagaaact
gttacttgcttgagtttttcagaagaagcaagaaatgttatacgagagctgtttacacat
tatcctcctgatgatggagagttgagtgaactaaggaattcaaaccagaaggctgccaaa
gtacagtttagacaagataagagcttttgcaaaccatcaatgggcaagtctgatattgca
aagaaagtgaagctgcttgcctctaaaataaatgaatcagcacagttgagaaaggttgtg
gaagatagggctaaacttccaattgcttcatttaaagatgtcatcacttcaacattggaa
actcaacaggtggtactgatttctggtgagactggttgcggtaaaaccactcaggttcct
cagtatatattggactgtatgtggagtaaaggtgaggcatgcaaaattgtgtgcacacaa
ccgagacgcatatcagcaatttcagttgctgagagaatatcttttgaaagaggcgaatct
gttggagaaaacataggatataagatacgtctggagtctaaaggtggaagaaactcctct
atactgttctgcacaaatggtgttcttctgaggttgttgattagcagaggctcaaatttc
tcaaaatcagtacacacaaaacattttccagatgatggtattatggggataacccacatt
atagtggatgaaattcatgaaagggatagattttctgattttatgctggcaatactcaga
gatctgctgcctgcatatcctcatctacgtatggtactcatgagtgctaccattgacgct
gagcgattttcacgatacttcagcggatgccctattattcaagttccaggatttacttat
cctgttaaaactttctatttggaggatgtactttctattttaagatctaccaatgataat
catcttaaccccacggctgcaagtgacctgaaggaaagtactacattgactgaagattac
atgagtgccctggatgaatcaattaatttggctttgtcaaatgatgaattggaccctctc
atggaacttgtttctactgagcagaacccaaaaatatacaacttccagcattcagtttct
ggtgtatcaccactaatggtttttgctgcgaagggtagtattggtgatgtttgtatgctc
ttatcatttggtgttgactgctctttacaagacaatgatggaaactctgcattggattgg
gcagagcaagagaatcagttagaggtgtatgaaattatcaagaagcacatggagaatgat
gcatcaaagtcagcagaaaaagaggagctactggacaaatatcttgcgagtatcaatcca
gaacacattgacacagtgcttatagaacgtctattaagaaaaatatgtattgattctgag
gaaggagccatcctagtctttcttccaggatgggatgacataaatcaagccagagagagg
ttgcttgcttctcctttattccgagatgcatcaaagtttgtgatactctcccttcattct
ttgattccctctgcagaacagaagaaggttttcaaacgtccacctcctggtgtccgtaaa
atcattctctcaactaacattgcagagactgctgttacaattgacgacgtcgtatatgtt
atagatagtggtcgaatgaaagagaaaagttatgacccttataataatgtatccactctt
cattcttcttgggtttctaaagctagcgcaaggcagcgggagggacgggccggtcgttgc
caggctggaatatgttatcatttatactcaaaacttcgttcgtcatctttgccagactac
caagttcctgaaataaagaggatgccgattgaggaactctgtttgcaggtgaagttgctc
gatcctgactgtagaatagcagattttttacaaaaaactttggatccaccagttccagaa
actgttcgtaatgcaataacagttcttcaagaccttggtgctttaactcatgatgaaaaa
cttacagatctcggggaaaaattgggttcccttcccgttcatccatctacgagcaagatg
cttctatttgctatcctgataaactgtttggagcctgcactgacactagcatgtgcagca
gattaccgagaaccttttattcttccaatggctcctgatgaaagaaagagagctgccgca
gccaaagttgagctggcttccttatatggtggttacagtgatcaactggcagttgttgca
gcatttgaatgttggaagcgtgcaaaagacaggggtcaagaatcacaattctgctcaaag
tattttgtctcttcgaataccatgaatatgttatctaacatgaggaagcaacttcaaagt
gaactaatgaagaatggttttattcctgaagatacatccggttgtaacgtaaatgctcaa
gatccaggtatccttcgtgcagttctcatggctggtgcttacccgatggtaggaagaatt
ctcccacgtcgcaaaaatattagaagagctattgtggagacgaccagtggcgccaaagtt
cgattgcatccacattcctctaactttaatctatcattcagtagagcttctggtagccca
cttatcatttatgatgagattacccgtggtgacggtggaatgtacataaagaactgctct
gttgttggcccatatccattactgttacttgcgatggaaatggttgttgctcctccagat
gatgaggatgatgagagtgatgaagatgaggaagtttctagtggcgaggaagatgaaatt
gaaatggacacttctggacaaattggagaggagattatgtcttctcctgagaatgctgtt
tcaattgttgttgaccgatggctaaggtttgaatcaactgcacttgatgttgctcagata
tactgcctaagagagcgtctatctgctgctatccttttcaaagtcagatatccccaagat
gttctaccttctgcacttggggcgtctatgtatgctatttcctgcattctttcatatgat
ggactgcccactataatctctgccgacgagtacacggacccgcaacaatcaatggtggat
gcagctgaactgaacaattatcctcaagtaagaagagggatgggttataattcacctagc
agtttcctgagatctttgatgtcagagaaagcacgaaaaacatccaatttcaataaaacc
cgggaatcagtgcatccaaaaacttacgcaactcgcctcccaccacatgcccaagttgac
aggtttcaacaacaaaggcctccctcacatggttccagttctggtagcactgcaccaagg
atcaggtctatgaaacggcagcgtggaaatactccgcaatga

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