Typha angustifolia (narrow-leaf cattail): 140758809
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Entry
140758809 CDS
T11061
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140758809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140758809
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140758809
mRNA degradation factors
5'-3' decay
Decapping complex
140758809
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
140758809
NCBI-ProteinID:
XP_072951213
LinkDB
All DBs
Position
4:join(3941933..3942017,3942783..3942937,3943685..3943741,3945147..3945216,3946860..3948928)
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AA seq
811 aa
AA seq
DB search
MVGLETEGGVSGNPDFFNDLRGLGDPDADNTCFDASQYAFFGKEVMEEIELGGLDDDADV
GFGGPEDKEYRFSSVHDREEVEALGSQSDIDDLTTTFAKLNRAINGTRNAGIIGDRGSFS
RESSSTADWTQEADLPNWIDQHAENTQESKRWWSQPHPSAARLAESQPLYRTSSYPTPQP
HHLSEATTTPNSPFTSYPLPGGQSNSSQNLTRHASIPYLSGGLQMPAPNSSFSGSQNHFV
GLPHGLHYGGNMSFPPPGHSINSQPQNHWSNQTGLFTGEHSDLFPNLLQQQLPHQNGLMT
PLSLSQQQLQRLQYVQPALPHYQYLQSHLFNHRPQIMSKFDAVLDMSELRDQRSKPSQRG
KQNTRFPQRSSDTSSQKNDNSWPQFRSKYMSAEEIESILRMQHAATHSNDPYIDDYYHQA
CLAKKSSGSRLKHHFCPASIKDLPSRSRANNEPHAYLQVDALGRVPFSSIRRPRPLLEVD
QSLATGDNIHEQKSSVKPLEQEPMLAARITVEDGLCLLLDVDDIDRLLVLSQPQDGGFQL
KRRRQVLVEGLAASLQLVDPLGPGKPDHSVGLAPKDDLVFLRLVSLTKGRKLLSRYLQLL
IPGSELTRIVCMAVFRHLRFLFGGLPSDSSAAETTTNLAKTVSSCVHSMELNALSACVAA
VVCSSEQPPLRPLGCSAGDGASVILKSVLDRATDLLTAPHAANNYTVSNRALWQASFDAF
FGLLTKYCLSKYDSILQMLLMQAPNTTVIGTETTRAVSREMPVELLRASLPHTNEHQRKM
LLDFAQRSMPIDSFSAHGGSNGPITSESVPG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggtggggctggaaacggagggcggggtttcaggaaaccctgacttttttaacgatctt
agaggattgggagaccccgatgcagataacacctgctttgatgcttcacaatatgcattc
ttcggtaaggaggtcatggaggaaattgaattggggggattagatgatgatgccgatgtt
ggatttggtggacctgaggacaaagaatatcgcttttcttctgttcacgatagagaagag
gttgaagctttaggctcgcaatctgatattgatgatcttacaactacatttgcaaagttg
aacagagctattaatggaacaagaaatgctggaattattggtgatagaggatctttttct
agagaaagttcttcaactgcagactggactcaggaggcagatcttccaaattggatagat
caacatgcagaaaacactcaggaaagtaaacgatggtggtcacaaccacatccttctgca
gctcggcttgcagaatcccaaccactgtacagaacatcttcatatcctacaccacaacca
catcacttaagtgaagcaactaccacaccgaactcaccattcacgtcttatcctctgcca
ggtgggcaatctaattcttcacaaaaccttacacgccatgcaagcattccatatctctct
ggtggtctccagatgcctgccccaaattcatctttttctggatctcagaatcattttgtt
ggactacctcatggattgcattatggaggaaacatgtcttttccacctccaggtcactca
attaatagccaacctcaaaatcactggtcaaaccaaactggtctgttcactggggagcat
tctgatctattcccgaacttgttacaacaacaattacctcatcaaaatggtttgatgaca
ccactgtcattgtctcagcagcaactgcagaggttacaatatgtccagccagctcttcct
cactaccaatacttgcaatctcacctcttcaaccaccgtccacagataatgagcaagttt
gatgcagttcttgatatgtctgaattgagagaccaaagatcaaagccatcacaaagagga
aaacaaaatacacgttttcctcaacgatcttctgatacaagtagccagaagaatgataat
agctggccacagttcagatccaagtacatgtcagctgaagagatagaaagtattttaaga
atgcaacatgctgctactcacagtaatgatccttacatagatgactactaccatcaagct
tgtcttgcaaaaaagtcttctggttccaggctgaagcaccatttctgcccagcatccata
aaggatttgccttccagatcgcgtgctaacaatgaaccccatgcgtatcttcaagttgat
gcacttggaagggttccgttctcttccatacgcaggcctcgtcctctccttgaagttgac
cagtctttggcaacgggtgacaacatccatgaacagaaatcttctgtgaagcccctggag
caagagccaatgctggcagccagaatcactgttgaagatggtctctgccttcttcttgat
gtagatgatatcgatcggttattagtgcttagccagccacaagatggtggcttccaactg
aagcggaggcgacaggtcctcgtggaagggcttgcagcatcacttcaacttgttgaccct
cttggcccaggtaaacctgatcattcagttggacttgccccaaaggatgaccttgttttc
cttcgcctagtctctcttactaagggccggaagcttctgtcacgctaccttcaacttctc
atccctggaagtgagctcactcggatagtctgcatggctgtttttcggcatctgaggttt
ttatttggtggtttgccttcagattctagtgcagcagaaacgacaaccaaccttgcaaag
actgtttcttcatgtgtacatagtatggaactaaatgccctcagtgcttgtgttgctgct
gtagtctgctcatctgaacagccacctcttcgtccacttggttgttctgctggtgatgga
gcttctgtaattttaaaatctgttcttgacagagcaacagaccttctgacagctccccat
gctgcaaacaattatactgtgtcaaaccgagccttatggcaggcgtcatttgatgcattc
tttgggcttctaacaaaatactgtttgagtaaatatgacagtatactgcaaatgttgctc
atgcaggcaccaaacactacagtcattgggaccgagacaactagagcagtaagcagggag
atgcctgtcgagctgctacgtgcaagccttcctcatacaaatgagcatcaacgtaaaatg
ttgctagattttgcgcagagatctatgcccatagatagtttcagtgctcatggtggtagt
aacggacctataacttctgaatctgttcctggttga
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