Typha angustifolia (narrow-leaf cattail): 140758823
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Entry
140758823 CDS
T11061
Name
(RefSeq) protein RDM16
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140758823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140758823
Spliceosome [BR:
tang03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
140758823
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
140758823
NCBI-ProteinID:
XP_072951246
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All DBs
Position
4:complement(join(2323493..2324354,2324435..2324592,2324671..2324865,2324963..2325412,2325509..2325784,2327112..2327918))
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AA seq
915 aa
AA seq
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MDRVSERERSTRRSRDERDKKEKNRERDRDSSKNYHRDRDRDQERDRDHKHWNRHHREDD
DERRRRRSRSEDSPSDTEHRREKERRHRRHHSRDESPSDVEGERSASRTRDSVDLDGVEN
RRSSRKRKEHSGDEELDGDGKRVRVFDVVREEKRERRRFDDDKNGVRMDEKEEERDTNLI
DTEVDRNEKKSKEGYLNAVDDRKKREKRKFSDGVNEEETRPENRVKDRARNGEFGQEEGS
KTVSFSTDKQVANGNQENDALEKGGSAVNNAAQKPLVVASKVSVTSSSHPLPTKVSSITT
TNENEGVSIRSDEVPGKSSTDGTATSTAGKSGNLSLDALAKAKKALQLQKELSEKLKKIP
ALNKLGSTSSNNSLVTSKKDENRVPLSGAGTQSAFSFTTASAAPPEATTNLAVGSTSSGK
QAAIGGIPELTNISNIEAVKRAQELAAKMGFRQDPEFAPLINMFPGPVSEVVAPQRPAKA
PVLRLDAQGREIDEHGNVINMPKLTNLSTLKVNINKQKKEAFQIIRPDLDSNVESNPHFD
PNMGVNKTKLLRPKRPGFQFVEEGKMSKIAEMQRIKSQFGEAQAKELKVKQAQLAKAKAE
ADINPNLITVAARVSKEKKKEEIPDIEWWDKQIILSGLYDDVSEEKLNMDKITIYIEHPR
PIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKERDRQEMIRQGLLEPPKAKVKMSNLM
KVLGTEATQDPTRLEMEIRSAAAEREQAHVDRNIARKLTPAERREKKERKLFEDQSTLET
LVSVYKIRDLSHPQTRFKVDVNAQENRLTGCVVISDGISVVVVEGGKKPIKRYNKLMLHR
IDWAAAVGSEDDADEKPDEPTNSCVLVWQGSVAKPSFNKFLVHQCRSEAAARKLFADAGV
PHYWDLAINFSEELL
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggatagggtttccgagagagagagatcgacccggcgatctcgagacgaacgcgacaag
aaggagaagaatcgagaacgcgatcgcgattcctccaaaaactaccaccgggatcgcgat
cgagatcaagagcgagatcgagatcacaagcactggaatcgtcatcaccgcgaagacgat
gacgagcgccgacgccgccgatcccggagcgaggattccccctccgataccgaacaccgg
cgcgagaaggagaggcgccatcgccgtcaccactcccgagacgaatccccttctgatgtc
gagggggagaggtctgcgagtcggaccagggattccgtggatcttgatggggtcgagaac
cgccgctcctcgaggaagaggaaagagcatagcggagacgaggagttggacggggacggg
aagcgggttagggttttcgacgtggtgagagaggagaagagggaaagacggcgttttgat
gatgataagaatggcgttcgtatggacgagaaggaagaagagagggatacgaatttaatt
gacacggaggtcgataggaatgagaagaagtcgaaagaaggatacttgaatgcggtggat
gatagaaagaagagggagaaaaggaagttcagtgatggtgttaacgaggaagagacgaga
ccggagaatagggttaaagacagggcaaggaatggagaatttggacaggaagaaggatca
aaaacagtaagtttttctacggacaaacaggtggctaatggtaaccaggagaatgatgca
ttggagaagggcggttcggcggttaataatgctgctcagaaaccgctggttgtggcatca
aaggtttcagtgacctcttcttctcatccccttcctaccaaggtatcttcaataactacc
accaatgaaaatgagggagttagtattagatctgatgaggttcctggaaaatctagtaca
gatgggacagcaacttcaactgctggcaaatctggcaacctgtctcttgatgctttagca
aaagcaaaaaaagctttacagttgcagaaggaattgtctgaaaaactgaagaagataccg
gcgcttaataagcttggcagcacgagctctaataactcattggtgacatccaagaaagat
gaaaatagagttcctctgtcaggtgcaggaacacagtcagctttcagttttacaactgct
tctgcagcccctcctgaggcaacgaccaatttagcagtgggaagtacatcatctggaaag
caagctgcaataggtggcatacctgagctcactaacatttctaatattgaagcagtaaag
agagcacaagagcttgctgctaagatggggttccgccaggatccagagtttgcaccactc
ataaatatgtttcctggtccagtatctgaagtggttgcacctcagagacctgccaaagct
cctgttctgcgtttggatgcacagggtagggagattgatgaacatgggaatgttattaat
atgcctaagctgacaaatctcagtactctcaaggtcaacataaacaaacagaagaaagaa
gcattccaaataattagaccagacttagattctaatgtggaatcaaatcctcattttgac
ccaaacatgggtgttaataagacaaagcttcttaggcctaaaaggccagggtttcagttt
gtagaggaaggaaaaatgtcaaaaattgccgaaatgcaaaggatcaagagtcaatttggt
gaagcacaagctaaggagttaaaagtgaagcaggctcagcttgccaaggcaaaagctgag
gcggatatcaacccaaacttaataactgtagcagcaagagtttctaaagagaaaaagaag
gaagagattcctgatattgagtggtgggacaaacaaattattctttcaggtttgtatgac
gatgtttctgaggaaaaactgaatatggacaagatcacaatttatatagaacatccacgt
cctattgagccgccagcagagcctgcacctccgccaccacaaccccttaagttgacaaag
aaggagcagaagaaactaaggactcagaggcgtcttgcgaaggaaagagacaggcaagaa
atgattaggcaagggctcttagagccccctaaggccaaggttaagatgagcaatctcatg
aaagttctaggcactgaagcaactcaagatcctacacgccttgagatggaaatacgtagt
gctgctgctgagcgtgaacaagctcatgttgacagaaacattgcccgcaagcttactcct
gcagaacgtcgtgagaagaaagaaaggaagctttttgaggatcaaagcacactggagact
ctagtttctgtctacaaaatcagggacctttcgcacccacagacacgctttaaagttgat
gtgaatgcccaagagaaccgactgacgggctgcgttgttatctcggatggcataagcgtt
gtggttgtcgagggagggaaaaagccaatcaaacggtacaacaagctgatgctgcatcgg
attgactgggcagctgctgtgggcagtgaggatgatgcagatgaaaaaccggatgagcca
actaatagttgtgtcttggtgtggcagggtagtgttgcaaaacccagcttcaataagttc
cttgttcaccaatgtagaagtgaggctgctgcgaggaagttgtttgctgatgctggggtt
ccacactactgggatctggctattaatttctcagaagaattactgtaa
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