Typha angustifolia (narrow-leaf cattail): 140758841
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Entry
140758841 CDS
T11061
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140758841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140758841
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140758841
mRNA degradation factors
5'-3' decay
Decapping complex
140758841
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIA
Motif
Other DBs
NCBI-GeneID:
140758841
NCBI-ProteinID:
XP_072951279
LinkDB
All DBs
Position
4:join(1083007..1083094,1083971..1084134,1085292..1085348,1086314..1086383,1087590..1089649)
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AA seq
812 aa
AA seq
DB search
MRGLDDVARVSGNPGSGADLAELGADAPVDDDLFNASRYAFFGKEIIEEIELGGLEGEGD
GDSDARFGGPGDEEYLPFIGDREEVEGLGSLSDIDDLTSTFAKLNRIVSEPRNAGIIGDR
ESFSIESSSTAGWTQDNDFPNWIDPHLLGEENIQEGKLWWSQPHPSSSQLSGSKPLYRAS
SYPQEQIQHHSSEPLRVPMSSFPSYPPPGGRSHPSALTRHASISSLASGLQMPSPNMSPG
SHRHLSGVPHGQYYGENVSFTSWPQNQWSNQANLFAAKHPNILPALLQQQLSQTNGLVQS
LLLSQYQQQILQQVQTTLPNSPHLQSHRFNHHPSPQIMGKFDQVMGTSAQRDHRFKSSKR
VRQSARSQQQLSDISSQKSSTGCPQFRSKYMSAEEIETIVRMQHATSRSNDPYIDDYYHQ
ACLAKKSCGSRLKQNFFPTSVKDRSSRSRANSESHGNLQPDGLGRVPFPSIRRPRPLLEV
DPPSASGEDVHEKRSSVKPLEQEPMLAARIAVEDGLCLLLDVDDINRLLQFSQPQDGGFQ
LKRRRQVLLEELAASLQLVDPLGPGTPNHPVGLSPKDDIVFLRIVSLPKGRKLLSRYLQL
LTPGSELARIVCMTVFRHLRILFGGLPLDSNAAETTITVAKTVSSCVLSMELSALSACLA
AVVCSIEQPPLRPLGSSAGDGASIIIKSVLDRATDLLTDPQTASNYSVPTRTLWQASFDS
FFKLLTNYCLSKYDSMMQVLLMQSPTTTVIGSEAARAISREMPIELLRASLPHTNEHQRK
TMLDFAQKSMLVTGSSAHTGSSSSINSESVPV
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgagggggctcgacgacgtcgctagggtttccggaaacccgggctcgggtgccgatctc
gccgaattgggcgctgatgctcccgttgatgatgacctcttcaatgcctcacgatacgca
ttttttggtaaggagatcattgaggaaattgaattaggtgggttagaaggtgagggagat
ggtgatagtgatgctagattcggtgggccaggtgatgaagaatatcttccttttattggg
gacagagaagaggtcgaaggtttaggttctttatctgatatcgatgatcttacaagcact
tttgcaaagttgaacagaattgttagtgaaccaaggaatgctggaattattggtgataga
gaatctttctccatagaaagttcttccacagcaggttggactcaggataatgacttccca
aattggatagatcctcatttattaggtgaagaaaacattcaagaaggtaaactttggtgg
tcacagccgcatccttcttcatctcagctttcaggatccaagccactatacagagcatct
tcatatcctcaggaacaaatacaacatcactcaagtgaaccgctccgtgttcctatgtcg
tctttcccttcctatcctccacctggtggacgatctcatccttctgctctcacacggcat
gcaagcatttcatctcttgcttctggcctccagatgccttctccaaatatgtctcctggt
tcacaccgtcatttgtcaggagtacctcatggtcaatactatggggaaaatgtgtctttt
acttcatggcctcaaaatcaatggtctaaccaagctaacctatttgctgcaaaacatccc
aacatattacctgccttgctgcagcaacaattatctcagacaaatggtttagtgcagtca
ctattgttatctcagtatcagcaacagatattgcaacaagtccagacaactctacccaat
tccccacatttgcaatctcatcgattcaaccaccatccttctccacagataatgggcaag
tttgatcaagttatgggtacatctgcacagagagaccatagatttaagtcatcaaagagg
gtaaggcagagtgcacgttctcagcaacagctttccgatataagtagccagaagagttct
actgggtgcccacagtttagatccaagtatatgtcagctgaagagatagaaaccattgtg
aggatgcagcatgctacatctcggagcaatgatccttacatagatgactactaccaccaa
gcttgtcttgccaaaaaatcttgtggttctaggctgaaacaaaatttcttcccaacatca
gtaaaggatcggtcttctagatcacgtgctaacagtgaatcgcacggaaatcttcaacct
gatggcctggggagagttcctttcccatccatccgcaggccacgccctctccttgaagta
gatcctccatctgcatcaggtgaagatgtccatgagaagagatcttccgtgaagccccta
gaacaagagccaatgctggcagccagaatagctgttgaagatgggctctgccttcttctt
gacgtagatgatattaaccggctgttacagtttagccagccacaagatggtggcttccaa
ctgaagcggaggcgacaggttcttctagaggagctcgcagcatcacttcaacttgttgac
cctcttggtccaggtacacctaaccatccagtggggctctccccaaaagatgatattgtt
tttcttcgcattgtctctcttcctaaaggccggaagctcctgtcacgctaccttcaactt
ctcactcctggaagcgagctcgctcgtatagtctgtatgaccgttttccggcatctaagg
atcttgtttggtggcttgccattagactccaatgcagcagaaacaacaataaccgttgcc
aaaactgtttcatcctgtgtactcagtatggagctaagtgcactcagtgcttgccttgct
gctgtagtttgttcaattgaacagccacctcttcggccacttggcagttctgctggagat
ggagcctccataatcataaaatctgttcttgacagggcaacagaccttctaaccgatccc
caaactgcaagcaactatagtgttcctactcgaactctatggcaggcatcctttgattct
ttctttaaacttctcacaaactattgtctgagtaaatatgacagcatgatgcaagtgcta
ctcatgcaatcaccaactactaccgtaattggatctgaggcggccagagctataagcagg
gagatgcctattgagttgctgcgtgcaagccttccccatacgaatgaacaccagcgaaaa
acgatgctcgattttgcccagaaatctatgctagttactggctctagtgctcatactggt
agtagtagctccataaattctgaatcagttcctgtttaa
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