KEGG   Typha angustifolia (narrow-leaf cattail): 140758874
Entry
140758874         CDS       T11061                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    140758874
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tang03400]
    140758874
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     140758874
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA_2 FHA
Other DBs
NCBI-GeneID: 140758874
NCBI-ProteinID: XP_072951356
LinkDB
Position
4:complement(join(10005432..10005529,10005627..10005780,10005888..10005965,10007499..10007589,10007710..10007763,10009576..10009679,10011032..10011181,10011418..10011552,10015951..10016040,10018360..10018617,10018699..10018775,10020222..10020282,10021971..10022183,10022986..10023258,10023476..10023661,10024163..10024177))
AA seq 678 aa
MSASRVKIGALVPLQSNLVVNDSASRIPIFEGANVVGRNHLAISDKRVSRKHISLHASGD
GSAEVLVEGPNPVIIRSEGHRRKICSQEKVMIVNGDVMELIPGTYLFKYVTIGDEHAFSS
TTDSSSSRKGKRHGEDVDLSAKRNRQILEDEAFARTLQDNMARHSTTTSILSSGSQLATT
NILDSSKMEAMQHFNVTRDGLPLIFRLMQVQGLPTWANSSSVTIQDVIEGNISVAVLSNY
MVDIDWLMSACPNLRKVPHVLVVHGETGASFEHLKKNKPANWILHKPPLPISYGTHHSKA
MLLVYPQGVRVVVHTANLIYVDWNNKTQGLWMQDFPWKDDKISNKGSFFENDLVDYLKTL
KWPEFSVKIPPVGNVSINAAFFKKFDYSSAMVRLIASVPGYHMGTNLKKWGHMKLRSVLE
ECKFDKEFCKSPLVYQFSSLGSLDEKWLNELASSMSSGTSDDGSPLGIGKPLIIWPTVED
VRSSLEGYAAGNAIPSPQKNVEKEFLKKYWARWKADHVGRCHAMPHIKTYTRHSGQDIAW
FLLTSANLSKAAWGALQKNNTQLMIRSYELGVLFLPSVICHGPVFSCTANDNLKTVDRKS
STPIDGRLKAKLVTLCWNGSKGTDSSSEVIQLPIPYQLPPQPYASEDIPWSWDRRYTKKD
VYGQVWPRHVQLYTSQES
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgtctgcttctcgggtaaagattggtgctctggttcctcttcaaagtaacctggtggtg
aatgactcggcctcaagaataccaatttttgaaggagctaacgttgtgggtcgcaatcat
ctggcaatctctgataaaagagttagccgcaagcatataagtttgcatgcatctggtgat
ggttcagctgaagttcttgtggaaggaccaaatcctgttattatcagatcagagggtcat
agaaggaagatctgttcccaggagaaagtcatgattgttaatggtgatgtgatggagttg
attcctggtacttatttatttaagtatgtgaccattggcgatgagcatgctttttcatca
acaacagattctagctcctctagaaaaggaaaaagacacggtgaagacgttgatctgtct
gccaaaaggaatagacaaattctcgaagatgaagcttttgcaagaaccttgcaggacaac
atggcacgacatagcacaacaacttctattctgtccagtggttctcagttggcaacaact
aatattcttgattcttcaaaaatggaggctatgcagcattttaatgtcactagagatgga
cttcctctgatctttcgactgatgcaagtccaaggtcttccaacatgggctaattcctcg
tcggtcactattcaagatgtgatagaggggaacatttctgttgctgtcctttctaattat
atggtggacattgattggctgatgtctgcatgcccaaatttgaggaaagttcctcatgtc
cttgttgtgcatggggaaactggtgcttcttttgagcatttaaagaaaaataagcctgca
aattggatcttgcacaagcctccacttcctatatcatatggaacacaccattcaaaggcc
atgcttcttgtatatcctcaaggggtgcgtgttgttgtgcacacggcaaatttgatctat
gttgattggaacaacaaaacccaaggcttatggatgcaagattttccttggaaagatgat
aaaatttcgaataaggggagtttttttgagaatgacctggttgattatctcaaaacacta
aagtggcctgaattctctgtgaaaattcctcctgttgggaatgtctcaatcaatgctgcc
ttctttaagaagtttgattatagcagtgcaatggtcaggttaattgcatctgttcctggg
tatcatatgggtaccaatcttaagaagtggggccatatgaaattaagaagtgttctggaa
gagtgtaaatttgataaagaattttgtaaatctccccttgtttaccagttttcttcctta
ggttcattggacgaaaagtggctaaatgagcttgcatcatcaatgtcttcaggtacttca
gatgatggatcacctttgggaatagggaagccccttattatctggcctactgtcgaagac
gttagatcctctctagagggctatgcagctggtaatgccattccaagccctcaaaagaat
gtagaaaaagagttcctaaagaagtactgggcaagatggaaagcagaccatgtaggccgc
tgtcatgcaatgcctcatataaaaacatatacacgccatagtggtcaggatattgcatgg
tttctgctgacttcagcaaacttgagcaaagctgcttggggtgcactgcagaagaacaat
acacaactcatgatacgttcttatgagttgggagtactattcttgccttctgtcatttgc
catggaccagtattctcatgcacagcgaatgataatttgaaaacggttgatcgcaagtca
tccacaccaatcgacggtcgtctcaaggcgaagttggtcactctttgctggaatggaagc
aaaggaacagattcatcttcagaagtaatccaattgcccataccataccaacttcctccg
caaccatacgcctccgaagacattccgtggtcgtgggaccggagatatacgaagaaggat
gtatatggtcaggtttggccgcggcatgtacagctatatacaagccaagaatcttag

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