Typha angustifolia (narrow-leaf cattail): 140758915
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Entry
140758915 CDS
T11061
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03030
DNA replication
tang03410
Base excision repair
tang03420
Nucleotide excision repair
tang03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140758915
03410 Base excision repair
140758915
03420 Nucleotide excision repair
140758915
03430 Mismatch repair
140758915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tang03032
]
140758915
03036 Chromosome and associated proteins [BR:
tang03036
]
140758915
03400 DNA repair and recombination proteins [BR:
tang03400
]
140758915
DNA replication proteins [BR:
tang03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140758915
DNA Replication Termination Factors
ELG1-RFC complex
140758915
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
140758915
DNA repair and recombination proteins [BR:
tang03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140758915
Check point factors
HRAD17(Rad24)-RFC complex
140758915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
Rad17
Sigma54_activ_2
Mg_chelatase
RuvB_N
DUF815
AAA_5
nSTAND6
ABC_tran
AAA_22
AAA_29
AAA_2
RsgA_GTPase
AAA_lid_RFC1
nSTAND3
ATPase_2
FtsK_SpoIIIE
AAA_23
TPGS1_C
AAA_24
TsaE
NB-ARC
Motif
Other DBs
NCBI-GeneID:
140758915
NCBI-ProteinID:
XP_072951414
LinkDB
All DBs
Position
4:complement(join(1650992..1651050,1652070..1652115,1652499..1652573,1652650..1652719,1652877..1652975,1653093..1653229,1653712..1653893,1654632..1654800,1654931..1654963,1655068..1655178,1655302..1655385))
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AA seq
354 aa
AA seq
DB search
MLWVDKYRPRTLDKIVVHEDIAKNLKKLVSEQDCPHLLFYGPSGSGKKTLIMALIKQMFG
PGAEKVKLESKMWKINAGTRTIELELTMLSSSHHVEMNPSDAGFQDRYVVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLIMCCNSSSKVTEAVRSR
CLNVRVNAPTEEQIIGVLEFIGKKEKLHLPVGLSARIAAQSNRNLRRAILFFETCRVQQY
PFTDNQVVPPLDWEQYVSEIASDIMKEQSPKRLFSVRGKLYELLVNCIPPEVILKKLLSE
LLKKLDSELKHEVCHWAAYYEHKMRLGAKPIFHIEAFVAKFMSIYKQFLIATFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgggtcgacaagtaccggccgagaaccctagacaagatcgtcgtccacgaagac
atcgccaagaatctcaagaagctggtatcggagcaggactgtccccatctcctcttctac
ggcccgtctggctcgggcaagaaaaccctaatcatggccttgatcaagcaaatgttcggg
cccggagcggaaaaggtgaaattagagagcaagatgtggaagattaatgctggtactcgg
acaattgagctagaattgactatgttgtcaagcagccaccatgtggagatgaatccaagt
gatgcaggttttcaggatagatatgttgttcaggagatcattaaagagatggcaaagaat
aggccaatagacaccaaagggaaaaagggttttaaagttctagtacttaatgaagttgac
aagctatcaagagaagctcagcattctctccggagaacgatggaaaaatatagtgcatcc
tgcaggctaattatgtgctgcaatagctcttcaaaagttactgaggctgttaggtctcgt
tgtctgaatgtgcgtgttaatgcacccactgaagaacagattattggagtgttagagttt
attggaaagaaggagaagctacatcttccagttggattatcagctcgtatagctgcacaa
tccaatcgcaatttgagaagggcaatattattttttgagacttgccgagtgcagcaatat
ccatttactgataatcaagtggtgccaccacttgactgggagcagtatgtctcagagata
gcatccgatatcatgaaggagcagagccctaaaaggttattttcagttcgtggaaaattg
tatgagctacttgttaattgtattcctcctgaagttatcttgaagaaattgttgtcagaa
ttactgaagaagttggattctgagttaaaacatgaagtttgtcattgggctgcatactat
gaacacaagatgcgtcttggggcaaaaccaatattccacatagaagcttttgtggcgaag
ttcatgagcatctataaacagttccttattgcaacatttggctga
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