KEGG   Typha angustifolia (narrow-leaf cattail): 140758915
Entry
140758915         CDS       T11061                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03030  DNA replication
tang03410  Base excision repair
tang03420  Nucleotide excision repair
tang03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    140758915
   03410 Base excision repair
    140758915
   03420 Nucleotide excision repair
    140758915
   03430 Mismatch repair
    140758915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tang03032]
    140758915
   03036 Chromosome and associated proteins [BR:tang03036]
    140758915
   03400 DNA repair and recombination proteins [BR:tang03400]
    140758915
DNA replication proteins [BR:tang03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    140758915
  DNA Replication Termination Factors
   ELG1-RFC complex
    140758915
Chromosome and associated proteins [BR:tang03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    140758915
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     140758915
  Check point factors
   HRAD17(Rad24)-RFC complex
    140758915
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 Mg_chelatase RuvB_N AAA_5 DUF815 ABC_tran RsgA_GTPase AAA_22 AAA_29 AAA_2 nSTAND3 AAA_16 AAA_24 ATPase_2 FtsK_SpoIIIE TPGS1_C TsaE AAA_23
Other DBs
NCBI-GeneID: 140758915
NCBI-ProteinID: XP_072951414
LinkDB
Position
4:complement(join(1650992..1651050,1652070..1652115,1652499..1652573,1652650..1652719,1652877..1652975,1653093..1653229,1653712..1653893,1654632..1654800,1654931..1654963,1655068..1655178,1655302..1655385))
AA seq 354 aa
MLWVDKYRPRTLDKIVVHEDIAKNLKKLVSEQDCPHLLFYGPSGSGKKTLIMALIKQMFG
PGAEKVKLESKMWKINAGTRTIELELTMLSSSHHVEMNPSDAGFQDRYVVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLIMCCNSSSKVTEAVRSR
CLNVRVNAPTEEQIIGVLEFIGKKEKLHLPVGLSARIAAQSNRNLRRAILFFETCRVQQY
PFTDNQVVPPLDWEQYVSEIASDIMKEQSPKRLFSVRGKLYELLVNCIPPEVILKKLLSE
LLKKLDSELKHEVCHWAAYYEHKMRLGAKPIFHIEAFVAKFMSIYKQFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtcgacaagtaccggccgagaaccctagacaagatcgtcgtccacgaagac
atcgccaagaatctcaagaagctggtatcggagcaggactgtccccatctcctcttctac
ggcccgtctggctcgggcaagaaaaccctaatcatggccttgatcaagcaaatgttcggg
cccggagcggaaaaggtgaaattagagagcaagatgtggaagattaatgctggtactcgg
acaattgagctagaattgactatgttgtcaagcagccaccatgtggagatgaatccaagt
gatgcaggttttcaggatagatatgttgttcaggagatcattaaagagatggcaaagaat
aggccaatagacaccaaagggaaaaagggttttaaagttctagtacttaatgaagttgac
aagctatcaagagaagctcagcattctctccggagaacgatggaaaaatatagtgcatcc
tgcaggctaattatgtgctgcaatagctcttcaaaagttactgaggctgttaggtctcgt
tgtctgaatgtgcgtgttaatgcacccactgaagaacagattattggagtgttagagttt
attggaaagaaggagaagctacatcttccagttggattatcagctcgtatagctgcacaa
tccaatcgcaatttgagaagggcaatattattttttgagacttgccgagtgcagcaatat
ccatttactgataatcaagtggtgccaccacttgactgggagcagtatgtctcagagata
gcatccgatatcatgaaggagcagagccctaaaaggttattttcagttcgtggaaaattg
tatgagctacttgttaattgtattcctcctgaagttatcttgaagaaattgttgtcagaa
ttactgaagaagttggattctgagttaaaacatgaagtttgtcattgggctgcatactat
gaacacaagatgcgtcttggggcaaaaccaatattccacatagaagcttttgtggcgaag
ttcatgagcatctataaacagttccttattgcaacatttggctga

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