KEGG   Typha angustifolia (narrow-leaf cattail): 140759163
Entry
140759163         CDS       T11061                                 
Name
(RefSeq) histone deacetylase 15-like isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:tang00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tang01009]
    140759163
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140759163
   04131 Membrane trafficking [BR:tang04131]
    140759163
   03036 Chromosome and associated proteins [BR:tang03036]
    140759163
Enzymes [BR:tang01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     140759163
Protein phosphatases and associated proteins [BR:tang01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     140759163
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     140759163
Membrane trafficking [BR:tang04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    140759163
Chromosome and associated proteins [BR:tang03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     140759163
SSDB
Motif
Pfam: Hist_deacetyl Zn_ribbon_RanBP
Other DBs
NCBI-GeneID: 140759163
NCBI-ProteinID: XP_072951748
LinkDB
Position
4:complement(join(1557666..1557838,1558251..1558419,1559094..1559139,1559236..1559318,1559883..1559962,1560414..1560522,1561028..1561096,1561726..1561776,1561938..1562063,1562206..1562329,1562879..1562934,1563492..1563556,1563749..1563824,1564469..1564530,1565079..1565190,1565351..1565896))
AA seq 648 aa
MESETLHNGSQKGRNFSKENKVHSEIHQAPWESSFSCPFECNKRSSPDGVNGTLHLNERN
LEERLLEEKNDGHCNPSTIHSDIVSTYETFNLAPNLRSIGNADENACLHDKNESCKACEC
AQPQNCQRTHNGSTLEDLYLQDAYDDEDDEDSDWEPVNHFVLKKWFCSNCTMSNFYDVSH
CDVCGEPRESELSGYDVFQSLVGKEACVSVDADAVCNYHASSSKTCTAIGFDERMLLHCE
VEMKSHPHPERPDRLRAIAASLVAAGIFPAKCSLIPAREITREELLMVHSSDHIEAVEQT
KNMLYSYFTSDTYANEYSACAARLAAGLCADLASSIMSGCTRNGFAMVRPPGHHAGVKQA
MGFCLHNNAAVAALAAQRAGAKKVLILDWDVHHGNGTQEIFEGNKSVLYISLHRHEGGSF
YPGTGAAEEVGSMDAQGYSVNIPWSCGGVGDNDYIFAFQHVVIPIALEFAPDITIVSAGF
DAARGDPLGCCDITPAGYAQMAHMLSAFAEGKMLVILEGGYNLHSISSSATAVVKVLLGE
SPNYDMTNVLPSKAGLQTVLQVLRIQLKFWPSLESCYALLQSHWGLISSNNRNHLKKRKR
LVGPFWWKWGSKRLIYELLYEGLHRKRSSTHDCKESVDLTANLDDAGS
NT seq 1947 nt   +upstreamnt  +downstreamnt
atggagtctgaaacacttcataacggtagtcaaaagggtaggaatttctccaaagagaat
aaagtacatagtgagatccatcaagcaccgtgggagagcagtttctcttgcccgtttgaa
tgcaataaaagatcgtctccagatggagtcaatggcactttgcatctcaatgaaagaaac
ttagaagagagacttttggaagagaaaaatgatgggcattgcaaccctagcaccatccat
tctgatattgtgtctacatatgaaacgtttaatttggcaccgaacttgagaagcatagga
aacgctgatgaaaatgcttgcttgcatgataaaaacgaaagctgcaaggcatgtgagtgt
gcacaaccacaaaattgtcagaggactcacaacggcagtacattggaggatctgtatttg
caagatgcttatgatgatgaggacgatgaagatagtgactgggaacctgttaatcatttt
gttctcaagaaatggttctgctctaattgcacaatgtcaaacttctatgatgtttcccat
tgtgatgtatgtggcgagcctagggagtctgaattaagtggatacgacgttttccaatcc
cttgttggaaaagaagcttgtgtttctgttgatgcagatgcagtttgcaactatcatgca
tcttcctcaaagacctgtacggccatcggttttgatgaaagaatgttgctgcattgtgaa
gtagagatgaaatcacatccacacccagaaagacctgatcgccttcgagcaattgcagcc
agccttgtagctgcaggaatttttcctgcaaagtgctccctgatacctgctagagagata
acacgagaggagcttctgatggttcactcttcagatcatattgaagctgttgaacaaaca
aagaatatgctttacagctacttcacttcagacacatatgccaatgaatattcagcttgt
gccgcaagacttgctgcaggattatgtgcagatcttgctagctcaattatgtctgggtgc
acacgaaatggttttgccatggtaagacctcctggtcatcatgcaggtgtaaaacaagca
atgggtttttgtcttcataataatgctgcagtggctgcattagctgcacagagagctggt
gccaagaaagttttgatactcgactgggatgtacatcatggcaatggcacacaagaaata
tttgaggggaataaatcggtcctatatatatctttgcatcggcacgagggtggaagcttc
tatcctgggactggagctgctgaggaggttggaagtatggatgctcaaggatactcagtc
aatattccttggagctgtggaggtgtaggcgacaatgattacatctttgcctttcaacat
gttgtgattcctatagctttagagtttgcccctgatatcaccatcgtatctgcaggattt
gatgcagcaaggggtgatccccttggctgttgtgatattactcctgctggatatgcacag
atggcacacatgttgtctgcttttgcagagggtaaaatgttggttatactagagggaggg
tataaccttcattcaatatcttcgtcagccacagcggtcgtgaaggtgctacttggagag
agtcctaattatgatatgaccaatgtactgccatcaaaagcaggcttacaaaccgttttg
caagtcttgagaattcagctgaagttttggccaagtttagaatcatgttatgcattgctg
cagtcacactggggattgatttcttcaaacaacagaaaccatctgaagaagaggaagcgt
ctggtcggaccattctggtggaaatggggaagtaaaagactcatctacgagttgttgtac
gaaggtcttcaccggaaaaggtcatcgacacacgactgcaaggagtctgttgatttgaca
gcaaacttagatgatgcaggaagctga

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