Typha angustifolia (narrow-leaf cattail): 140759165
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Entry
140759165 CDS
T11061
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
140759165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tang04121
]
140759165
03036 Chromosome and associated proteins [BR:
tang03036
]
140759165
Enzymes [BR:
tang01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140759165
Ubiquitin system [BR:
tang04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
140759165
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
140759165
Noncanonical PRC1 (PRC1.1)
140759165
Noncanonical PRC1 (PRC1.3/1.5)
140759165
Noncanonical PRC1 (PRC1.6)
140759165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-UDP
zf-RING_4
zf-RING_6
zf-rbx1
zf-Nse
zf-C3HC4_5
zf-RING_11
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
140759165
NCBI-ProteinID:
XP_072951752
LinkDB
All DBs
Position
4:join(8785330..8785612,8785708..8785762,8793870..8793928,8801426..8801507,8801680..8801800,8801938..8801979,8802090..8802626,8802771..8802878,8802970..8803167,8803247..8803279)
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AA seq
505 aa
AA seq
DB search
MPAQKRPHAASSDHQTVEHLAATAEDSSMRPCSPPPPTPPQQKQEEEEEEEEEEEEEEEE
EEEKVEVKVEKKNEEGEGEEMHANPNPERPQEQDDSDADADSQSSLSAADKDEFILVKLA
EIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD
PNYDALIAALYPDIDKYEEEELAFHEEEKNRNKKIQACIAETLRRQSDALGRRRPTAKAT
AAAFVRKSQGNFRTNGQNSYLRGRGRTGGRENALAVSDDEEEGNGNDGSKESSSADERSP
DIRQKRCKRWPVPRSSPARTASNADSGYDDNDDLGVSRENLSTSPLRAAWGKNGVRSQTR
HGNASGSNGRVVKGARTTKLVEHLRNLDETDNQVDIHLIMLPLEGENMPNLRTPYLCCQR
TMSIKQLCLFIACQTSLQAEEVQIYARTPQHGYSAINNPTIIDKTVDPFEGLQMLEPEKS
LSELCASFTSAQGDLELVYVSKLQS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcccagaagcgtccgcatgcggcttcctccgaccaccaaaccgtcgaacatctt
gcggccactgcggaggactcatctatgagaccttgttctcctcctcctcctacgccacca
cagcagaagcaagaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggag
gaggaggagaaggtggaagtcaaggttgagaagaagaacgaggagggggagggggaggag
atgcatgcgaatcccaatcctgagcggccgcaggaacaggacgattccgatgcggacgcc
gacagccaatcgtcgctgagcgccgccgacaaagatgagtttatactagtcaaattagca
gagatacgcaaagaagtgcaatgccctatatgcttaggaataatcagaaaaacaagaaca
gttatggagtgcctgcatcggttttgcagagagtgtattgataaatcaatgcggctgggc
aacaatgaatgtccagcatgtcgcactcactgtgcaagtcgacgttctttaagggacgat
ccaaattatgacgccctcattgcagctttatatccagatattgataagtacgaggaagag
gaacttgctttccatgaagaagagaaaaatcgcaataagaagattcaagcatgcatagct
gaaactcttcggcgacaatcagatgctcttggaaggaggagacctactgcaaaagcaaca
gctgctgcttttgtaagaaaatctcaagggaacttccgaactaatggacagaacagttac
ctgcgggggagaggtagaacaggtggtcgtgagaatgcacttgcagtttctgatgacgaa
gaggaaggaaatggtaatgatgggagcaaggaatcctcttctgcggatgaacggtctcca
gatataaggcaaaagagatgcaagagatggccagtaccacggtcttcaccggctagaaca
gcaagcaatgcggacagtggctatgatgacaatgacgatttgggagtcagtagagaaaac
cttagcacatctcctttacgagctgcatggggtaagaatggtgtacgaagtcaaacacga
catggcaatgctagtggttcaaatggtagggtggtcaaaggtgcacgcacgaccaaattg
gtggaacatttacgaaatttagatgaaactgataatcaggttgacatacacctgattatg
ctgccactggaaggagaaaatatgcctaatttgcggacaccttatctttgctgtcagcgg
accatgtccattaaacagctatgcctatttatagcttgccagacatctcttcaagctgaa
gaagttcagatatatgccaggacgcctcagcatggatactcagcaatcaataacccaact
ataatagacaagaccgttgatccttttgagggcttacaaatgctggagccagagaaatca
ctttcagagctgtgtgcttcattcacttctgcgcaaggggatctggaattggtatatgtt
tcgaaattgcaaagctag
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