KEGG   Typha angustifolia (narrow-leaf cattail): 140759408
Entry
140759408         CDS       T11061                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03082  ATP-dependent chromatin remodeling
tang03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    140759408
   03083 Polycomb repressive complex
    140759408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tang03036]
    140759408
Enzymes [BR:tang01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     140759408
Chromosome and associated proteins [BR:tang03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     140759408
   HDAC complexes
    Sin3A-HDAC complex
     140759408
    BRAF-HDAC complex
     140759408
    REST complex
     140759408
    SHIP complex
     140759408
    MiDAC complex
     140759408
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     140759408
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    140759408
  Chromatin remodeling factors
   NuRD complex
    140759408
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 140759408
NCBI-ProteinID: XP_072952105
LinkDB
Position
1:complement(join(3885254..3885342,3885810..3885876,3886976..3887074,3887377..3887447,3889384..3889474,3889547..3889596,3890127..3890235,3890355..3890447,3891707..3891770,3891937..3892156,3892226..3892300,3892425..3892542,3892641..3892753,3893936..3893972))
AA seq 431 aa
MPPKERIAYFYDGDVGNVYFGPNHPMKPHRLCMTHNLVLSYGLHNKMEIYRPHKAYPVEL
AQFHSADYVEFLHRISPNTQHLFGSELTRYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NHQLCDIAINWAGGLHHAKKSEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDMFFPGTGDVKDIGEREGKYYAVNVPLKDGIDDASFTRLFKT
IIAKVVETYLPGVIVLQCGADSLAGDRLGCFNLSIEGHSECVKFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNQIPDNEYIKYFAPDCNLKIKNGNMENLNSKSYLSTIK
MQVLESLRCIQHAPGVQMQEVPPDFYIPDFDEDEQNPDERIDQHMQDKQIQRDDEYYEGD
NDNDHNMEDDL
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgccgcccaaagagaggatagcctacttctacgacggagatgtgggtaatgtttacttc
gggccaaatcacccaatgaaaccacatcgtctttgtatgactcataatctcgtgctttca
tatggacttcataacaagatggagatatatcgaccccacaaggcatatccagttgaactc
gcccagttccattcagcagattatgtggaatttttgcatcggatatctcctaacacacaa
catctgtttggaagtgaattaactagatataatcttggagaagactgccctgtctttgat
aatctgttcgagttctgtcaaatttatgctggtggaacaatagatgctgcaagaagattg
aatcatcaactctgtgatattgctataaactgggctggtggtttacaccacgcaaagaag
tctgaggcatctggattttgctatatcaatgacttggtcttaggaatcctagagcttctc
aagtaccatgccagagttctctatatcgatatagatgttcatcatggagatggggtcgaa
gaagctttttatttcacagacagggtgatgactgtaagtttccacaagtttggcgatatg
ttctttcctggaacaggcgatgttaaggacattggtgaaagagaaggaaagtattatgct
gttaatgtaccactcaaagatggaatagatgatgctagctttactcgacttttcaaaaca
atcattgccaaggttgttgaaacatatctaccaggtgttattgttcttcaatgtggagct
gattctttggctggagaccgcctaggatgtttcaatctctccatcgaagggcactctgaa
tgtgtgaaatttgtgaagaaatttaatttgcctctactggtaactggaggtggaggatac
acaaaggaaaatgtagctcgctgctggactgttgaaactggcgttctattagacacagag
ctcccaaatcaaattccagacaatgaatatataaaatattttgccccagattgtaatttg
aagatcaagaatggcaatatggagaacttgaatagcaagtcatatcttagcacaatcaag
atgcaagttctggaaagcctgcggtgcatacagcatgctcccggagttcagatgcaagag
gttccgccagatttctatatcccagactttgatgaagatgagcagaatcctgatgaacgt
attgatcagcatatgcaagacaagcaaattcagcgagatgatgagtattatgaaggggac
aatgacaatgatcacaacatggaggatgacctgtaa

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