Typha angustifolia (narrow-leaf cattail): 140759511
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Entry
140759511 CDS
T11061
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang00040
Pentose and glucuronate interconversions
tang01100
Metabolic pathways
Module
tang_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
140759511
Enzymes [BR:
tang01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
140759511
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
140759511
NCBI-ProteinID:
XP_072952192
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All DBs
Position
4:complement(join(6074742..6074969,6075388..6075513,6076203..6076311,6076430..6076511,6076787..6076994,6077083..6077103,6077196..6077366,6077471..6077599,6077722..6078021))
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AA seq
457 aa
AA seq
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MALLKLLSFSILMLFLNHHTCYGNLEDDTNLGCSNDTSSYNISSYPTNFSEPDSVDDGAM
AYDDWGRFALETFDQVDISQGVFNVDKFGAKGDGSTDDTKAFEKAWAKACSSSISAVLLV
PKKKYLLKPITFYGSCASSVTIMIEGTIEASSRSSDWTSKNRRHWMLFNGIKNLTVTGGG
TINGNGKIWWQKSCKVNKSLPCKNAPTAMTFYSCNNLRVENLKVENSQQIHVNFEKCSNV
RAAKLTITAPSSSPNTDGIHVTRTKNIEITNCVIKTGDDCISIVTGSKGVKATKIVCGPG
HGISIGSLGAGKSRAQVSGVTIDTAQFSGTQNGVRIKTWQGGSGYAKNIVFKNLVMNDVQ
NPIIIEQNYCDRGTGNECIATSNSAVEVSNILYQNIKGTSASQVAVKFSCSESIPCHGIV
LQNINLVAKVGGSPTKSTCENAKWSKKGTVVPAPCKY
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccctacttaagcttctttcattctcaattctcatgctattcttaaatcaccatacc
tgctatggtaacttggaagatgacaccaaccttggctgttccaatgacacctcttcatat
aatatcagctcttatcctacaaatttcagtgagcctgacagcgtcgacgatggtgcaatg
gcgtacgatgactggggtcggttcgctctagaaactttcgatcaagtggatatctcgcag
ggtgtgttcaatgtggataaatttggtgctaaaggtgatggaagtacagatgatacaaag
gcatttgagaaggcctgggcaaaagcttgttcctcttctatttcagctgttcttttagtc
cctaagaagaagtacctccttaagccaattaccttctatgggtcttgtgcatcaagtgtt
acaataatgattgaggggacaattgaagcttcttcgagatcgtcagattggacatcgaag
aaccgaagacactggatgctattcaatggaataaaaaatctcactgtgactggtggtgga
accatcaatggtaacggaaagatatggtggcaaaagtcttgcaaagtcaacaagtctctt
ccttgcaagaatgcccctacggccatgacattctattcttgcaacaatctgagggtggag
aatctgaaagtggaaaatagccaacagatccatgtaaactttgagaagtgcagcaatgtg
agagctgctaagctcaccatcactgctccttcatccagccctaacactgatggcattcat
gtgaccagaaccaagaatattgagataaccaattgtgtcatcaagaccggtgatgattgt
atatctatcgtgaccggatcgaaaggcgtaaaggctaccaaaatagtctgtggacctggc
catggaatcagtattgggagtttaggagcaggcaaatcaagagctcaagtctcaggtgtt
accatagacacagcacaattcagtggcacccaaaatggggtcagaatcaagacatggcag
ggaggaagtggttatgccaagaatatcgtcttcaagaacttggtgatgaatgatgtgcaa
aatcccataatcattgagcaaaactattgcgaccgcggcaccggcaatgaatgcatagca
acaagtaattcagctgtggaagtaagcaacattctctaccaaaacatcaaagggacaagt
gcttctcaagttgctgttaagtttagctgcagtgaaagcattccttgccatggcatagtg
ctgcagaacatcaatctagttgcaaaagttggtggtagcccaacaaaaagtacatgcgag
aatgctaagtggagtaagaagggaactgttgttccagctccttgcaagtactaa
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