Typha angustifolia (narrow-leaf cattail): 140759752
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Entry
140759752 CDS
T11061
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tang03009
]
140759752
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
140759752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
NBCH_WD40
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
140759752
NCBI-ProteinID:
XP_072952500
LinkDB
All DBs
Position
1:join(3173740..3173964,3174335..3174448,3174633..3174766,3174866..3175016,3175111..3175313,3175547..3175674,3175869..3176128,3176204..3176362)
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AA seq
457 aa
AA seq
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MERKGEGLVVVCSEEKSAGITVWEIETGDELLRIPNFAASPHGLLFFESHFLLASLVQKH
RPCSGGAIFFWDLNKPQAPQKSYLLEPIVPIASSKDGIYLVGGAPSGYTYIWEIMSGRLL
RRWHAHQKSLSCLAFSQDDSLLVSGSEDGTVCVWSMISVLDMGDYEARRSCPTFQIWSKH
QSYITGLLTLSSGSNPVLVSSSLDGTCKVRELVSGRLLQTQVLSVAVTAIAVDPAEQLLF
SGGEDGAIYLSKLAIRMSDDPVVVSKDDCGILCEHKAPITALAFSVGGIWLISASKDCTA
CLWDTKSWKAIKKFNQDKGLVLPTICPLTGISNLVVIPNSSLYDGDRHRSFLHPRVAILD
KVPHQSSAAEGTTSLLPSYCSIGDHLLSNGFRASRLLKEQILDLEEERTAEAIQMKVMTN
MEKRLSAINTTKQMTQINKTLRLRLLDMMQLRLCQDS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggaaaggagagggattggtggtggtgtgcagtgaggagaagagtgcggggata
acagtgtgggagattgagactggggatgagctcttgagaatacccaactttgctgcatca
ccccatggccttctattttttgagagtcacttcctgttggcctctctagttcaaaagcat
agaccttgcagtgggggggccatcttcttctgggatctcaacaagccccaagcaccacaa
aaaagctaccttcttgagcccattgtgcccattgctagctctaaggatggtatatatctt
gtcggcggagctccttctggatatacatacatttgggagattatgagtggaaggctacta
aggagatggcatgctcatcagaagtcccttagctgcttagccttttcccaagatgattct
cttctcgtttcgggttctgaagacggcacagtgtgtgtttggtctatgatcagtgtactt
gacatgggagattatgaagcacgtagaagctgtcctactttccaaatttggtcaaaacat
caatcttacatcactggtctgctaacattatcaagcggttcgaatccggtattagtatca
agctcccttgatggcacttgcaaggtcagagaacttgtttcaggaaggctacttcagact
caagtcctctctgttgctgtgactgcaatcgctgttgatccagcagagcaactgctgttt
tctggaggcgaagatggcgcaatatatctcagcaaactcgctattcgaatgagtgatgat
ccagttgtagtctcaaaggatgattgtggaattctatgtgagcataaggctccaattact
gctttagcattcagtgtaggaggaatttggttgatttcagcatcaaaggactgcactgct
tgcctatgggatacaaaaagttggaaagcaatcaagaagttcaaccaagataaaggcctt
gttcttccaacaatttgtccattaacaggtatatcaaacttggtagtgatccctaactca
tctctctatgatggagatcgccatcgaagtttccttcatcctcgagtcgcgatattagac
aaagttcctcaccagagcagtgcagcagagggaacaactagccttctaccatcatactgt
tctatcggagatcatctcctctccaatggttttcgagcttctcgacttctaaaggagcaa
attcttgacctggaggaagagagaacagcagaggcaatccagatgaaggttatgacaaac
atggagaagcggctgtcggctataaataccacaaagcaaatgacacagattaacaaaacc
ttaagactgcgattgctagatatgatgcagcttagattatgccaagattcttag
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