Typha angustifolia (narrow-leaf cattail): 140759899
Help
Entry
140759899 CDS
T11061
Name
(RefSeq) homeobox-leucine zipper protein ROC8-like
KO
K09338
homeobox-leucine zipper protein
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tang03000
]
140759899
Transcription factors [BR:
tang03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
140759899
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
140759899
NCBI-ProteinID:
XP_072952690
LinkDB
All DBs
Position
5:complement(join(6436072..6436452,6436534..6436623,6436721..6436989,6437068..6437248,6437337..6437546,6437632..6437730,6437812..6438270,6438566..6438754,6438915..6439032,6439193..6439287))
Genome browser
AA seq
696 aa
AA seq
DB search
MDFGDDQDGSDGQRKKKRYHRHTPRQIQQLEAMFKECPHPDEKQRMQLSRDLALEPRQIK
FWFQNRRTQMKAQHERADNCALRAENDKIRCENIAMREALKNVICPTCGGPPVTEDSYFD
EQKLRMENARLKEELDQVSSLTSKYLGRPITQLPPVQPVPISSLDLSVGGLGSPVIGPSL
DLDLLTGSSSAIPFPFPTAVSEMEKPIMADMATSAMDEVIRLVQTDEPLWVKPGGDGREV
LSLETYDRIFRKPGNHFRGPDIRVEVSRDSGLVFINAVQLVDVFMDSNKWLEFFPSIISK
TRTIEVLAAGMSGRSGSLLLMYEELHVLSPVVPTREFCFLRYCQQIEQGLWVIADVSVDL
PRENQYSTPSRSRRLPSGCLIQDVPNGYSKVTWVEHMEIEEKAPVHLLYRDLVNSGTAFG
AHRWLTTLQRTCERFACLMAAGNSPRDLGGVIPSPEGKRSMMKLSQRMVNNFCVSLSSSQ
VHRWTTLSGLNDVGVRVTVHRSSGPGQPSGVVLSAATSLWLPISCERVFTFFRDENMRSQ
WDVLSSGNSVQEVARITNGSHPGNCISLLRGLNSSQNSMLILQESCTDASGSLVVYAPID
IPAINIVMSGEDPSNISLLPSGFAILPDGRSGGGSGASTSSNPMGSSLGSLITVAFQILV
SSLPSSKLNVESVATVNNLISTTVQQIKAALNCPSG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggattttggcgacgaccaagatggctcggatggccagaggaagaaaaagcgctaccac
cgccacactccgaggcagatacagcaactggaagcgatgtttaaggagtgcccgcatccc
gacgagaagcagaggatgcagctgagcagggatttggctttggagccacggcagatcaag
ttctggttccagaataggaggacccagatgaaggcccagcacgagagggccgacaactgc
gctctccgggcggagaacgataagatacgctgcgagaatatcgccatgagggaggcgctc
aagaatgtcatctgccccacttgcggcggccctccggtcaccgaggactcctacttcgat
gagcagaagctaagaatggagaatgctagattgaaagaagagctcgatcaagtttccagc
ttaacatcgaaatatctcggaaggccgattacgcaacttcccccggttcagccagtaccc
atttcttcgttagatttgtcggttgggggactcggaagtccggtgattggcccttcgctt
gaccttgatctccttactgggagttcatctgctataccatttccattcccaacagccgta
tctgaaatggagaagcctatcatggcggacatggccactagtgcaatggatgaggtgata
aggctagtgcaaactgatgaacccctatgggtgaagcctggtggcgatggcagggaagtc
ctcagcctcgaaacctatgatcggatctttcggaagccagggaaccacttccggggccct
gatatccgcgtcgaagtctcaagggattccggcctggtgtttatcaatgcagtgcaattg
gttgatgtgttcatggactcgaacaaatggttagagttttttcccagcattatttccaag
actaggacaattgaagtccttgcagctggaatgtcaggaaggagcggatcactacttttg
atgtatgaagaactgcatgttctttcgccagtcgtgccgacccgcgagttctgcttcctg
cgttactgtcagcaaattgaacaaggcttatgggttatcgctgatgtttcggtagactta
ccccgagaaaatcaatacagcactccttcccggtcccgaaggctaccttctggctgcttg
attcaagatgtgcccaatggttattccaaggtgacttgggtggaacacatggaaatcgag
gagaaagctcctgttcatctactctaccgtgatcttgttaacagcgggacagcatttgga
gctcaccgatggctgaccaccctgcagaggacttgcgaaagatttgcgtgtctaatggct
gctggcaattcccctagggatcttggaggagtgattccctcaccagaaggcaagaggagc
atgatgaagctttcacagaggatggtcaataacttctgcgttagtttgagttcatcccag
gtccaccggtggacgacgctctcaggactgaacgatgttggtgtgcgagtcacagttcat
agaagctcaggtcctggccagcccagtggcgtcgttctcagtgccgcaacctctctatgg
ctgcctatatcatgcgagagagtcttcactttcttcagagatgagaacatgcgatctcag
tgggatgttctctcaagtggcaactcagtgcaagaggttgcgcgaattacaaatggttcg
catccagggaattgcatttctctcctccgaggactcaactccagccagaacagcatgcta
atactacaagagagctgcactgatgcatccggctcactagttgtgtatgctcccatcgac
atcccggccatcaacatagtaatgagcggcgaggatccctccaacatctcgctcctccca
tcaggttttgcaattctgcccgacggccgatcaggagggggtagtggggcctcgacgagc
tcgaatccgatgggcagctcattgggttctctgatcaccgtggcgttccagatactcgta
agcagcctgccatcatcgaagctgaacgtcgagtcagtggcaacggtcaataacctcatt
agcaccactgtgcagcaaataaaggctgccttgaattgccccagcgggtga
DBGET
integrated database retrieval system
