Typha angustifolia (narrow-leaf cattail): 140759937
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Entry
140759937 CDS
T11061
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03015
mRNA surveillance pathway
tang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140759937
09123 Folding, sorting and degradation
03018 RNA degradation
140759937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140759937
03041 Spliceosome [BR:
tang03041
]
140759937
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140759937
mRNA cycle factors
Stress granule specific factors
140759937
Spliceosome [BR:
tang03041
]
Complex C
Other components
Complex C specific factors
140759937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_Nup35
RRM_3
RRM_RdRP1_2
RRM_7
RRM_MARF1
RBD_AKAP-17A
BRAP2
GH97_C
TEX47
Chromo_MORC2_6th
HobA
Motif
Other DBs
NCBI-GeneID:
140759937
NCBI-ProteinID:
XP_072952750
LinkDB
All DBs
Position
5:complement(join(2821406..2821663,2822205..2822408,2828648..2828824,2830813..2830950,2831657..2831746,2831821..2831898,2832009..2832665,2832797..2832915,2835714..2835969))
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AA seq
658 aa
AA seq
DB search
MAQVQIAANGAAANSGGGGGGGGGAGNQFPITSLYVGDLDLNVIDAQLFDLFSQVGHVVS
VRVCRDVDTRRSLGYAYVNYSSPLDAARALDMLNFTPLNGKPIRIMYSNRDPSNRRSGSA
NIFIKNLDKTIDNKALHETFSAFGNILSCKVATDPSGQSKGYGFVQFEQEEAAQHAIEKL
NGMLLNDKPVFVGPFLRKQDRENSVDKTKFNNVFVKNISESTTKEDLQEIFGKYGTITSS
VVMTDGEGKSRCFGFVNFENSDDAAHAVQELNGKKFNDKEWYVGKAQKKSEREVELKVRF
DQSAKEVVDKYQGLNLYLKNLDDSIGDEKLKELFSNFGMITSCKVMRDQNGVSRGSGFVS
FSTPEEASRALGEMNGKMISGKPLYVAIAQRKEDRRARLQAQFSQMRPIAMTPAVAPRVP
MYPPGPPGLGQQVFYGQAPPTLMPPQTGFGFHQQLVPGMRPAGAMPNFFMPFVQQGQQDQ
RQGGRRTGTGPMQQTQQPMPVIQQQQMFPRGRVYRYPPGRNMPDAPMPGAAGGMFSPYDM
GALPLRDPGMSQPIPIGTLASALANATPEQQRTMLGENLYPLVEQLERDHAAKVTGMLLE
MDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQQQQQPSAPTDQLAALSLNDGLIS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggtgcagatagcggccaatggcgcggcggcgaacagcggcggcggcggcggc
ggaggaggaggagcaggaaatcagttcccgatcacgtcgctttacgtgggggatttggat
ttgaacgtcatagacgcccaattgttcgatctgttcagccaggtcggacatgttgtgtcg
gtgcgcgtctgccgcgatgtcgacacccggcgatcgctcggttacgcttacgtcaactat
agcagcccccttgatgctgcgagggcattggatatgctaaactttactcctctaaatggc
aagcccattcggattatgtattcaaaccgtgatccaagcaatcgcagaagtgggtctgca
aatatatttattaagaacctggataagacaattgacaacaaggcattgcacgagactttt
tctgcatttggtaacattctctcttgtaaagttgctacagatccatctggtcagtcaaaa
gggtatggttttgttcaatttgaacaagaggaggcagcacaacatgcaatagagaaacta
aacggcatgctattaaatgataagcctgtttttgttggaccttttcttcgcaagcaggac
agggagaactctgtagacaagacaaaatttaacaatgtttttgtcaaaaatatatctgag
tccaccacaaaggaagatttacaagaaatttttggtaaatatggtactattactagttct
gtagtaatgacagatggtgaaggtaaatcaaggtgctttgggttcgtaaattttgagaat
tcagatgatgcggctcatgcagttcaagaacttaatggaaagaaatttaatgataaggag
tggtatgttggaaaagcacagaaaaagtcagaaagagaggtagaattgaaagtaagattt
gatcagagtgcaaaagaggtagtggacaaatatcaaggactgaacttatatttgaaaaat
ttggatgatagcattggagatgaaaagctgaaagaattattttctaactttggtatgatt
acctcatgcaaggtcatgagggatcaaaatggcgtaagtagaggatctggctttgtttct
ttctcaactcctgaggaagcatctcgagctctaggagagatgaatgggaaaatgatttct
ggcaaaccgctatatgttgccatcgcacagcgtaaagaagatagaagagctagattgcag
gcacagttttcacaaatgcgacctatagcaatgacacctgctgttgctcctcgtgttccc
atgtatcctcctggtcccccaggtcttggacagcaagtattctatggtcaagctccacct
acccttatgccccctcagactggatttggcttccaccaacagcttgttcctgggatgagg
cctgcgggtgctatgcccaatttctttatgccatttgttcagcaaggtcagcaggaccaa
cgacaaggtggccgacgcactggaactggacctatgcaacagacacagcaacctatgcca
gtaattcagcagcagcagatgtttccaagaggccgagtttaccgctatcctcctggacgc
aacatgcctgatgctccgatgcctggtgctgctggaggaatgttttctccgtacgatatg
ggagctctgccattacgtgatcctggcatgtcccaacctattccaatcgggactctggct
tcagcccttgcaaatgctactccggaacagcaaaggacgatgcttggcgagaacctctac
ccactcgtggagcaacttgaacgtgatcatgctgcgaaagtcacaggaatgctcctagag
atggatcaaactgaggtcttgcatttgttggagtcacccgacgccctaaaagcaaaagta
gcagaggccatggaggttcttaggaatgtagcccagcagcagcagcagcagcagcagcca
agtgcaccaactgatcagttagctgcactatctctgaatgatgggctcatttcctga
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