Typha angustifolia (narrow-leaf cattail): 140759966
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Entry
140759966 CDS
T11061
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 23-like isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tang01002
]
140759966
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tang04121
]
140759966
Enzymes [BR:
tang01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
140759966
Peptidases and inhibitors [BR:
tang01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
140759966
Ubiquitin system [BR:
tang04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
140759966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
140759966
NCBI-ProteinID:
XP_072952800
LinkDB
All DBs
Position
5:complement(join(5016056..5016218,5017852..5017945,5018139..5018736,5018816..5018971,5019079..5019825,5020354..5020479,5020588..5020914,5021010..5021182,5021352..5021462,5023135..5023249,5023507..5023803))
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AA seq
968 aa
AA seq
DB search
MAGTSSDGGCAAAPLQEDSLYSRRIEFHTARKPSSAMSRGGSGVFCLEKLIPSSDPRSTP
DASAESALKAPSDRISEGRDFYEHGLDPELSFRITFRRIGAGLANLGNTCFLNSVLQCLT
YTEPFAAYLQSGKHKSSCHTSGFCAMCALQNHVMVALQSTGKILSPFHLVKNLRCISRNF
AKFEQEDAHEYMVQLLESMHKCCLPSGVPIESPSAYEKSLVHKIFGGHLRSQVKCMQCSY
GSNKFDPFLDLSLEIVKADSLQKALKHFTEEEELDGGARQYECQHCKKKVRARKQLTIHK
APYVLTIHLKRFSPYIPGQKIDRKVEFGPKLDLKPFVSDSHIAALKYTLYGVIVHAGWNT
HSGHYHCFVRTSSGMWHSLDDNKVSQVSEKTVLEQKAYMLFYVRDRTPTVKSSVNAVRKD
NVAANASGNKMVSQPLLGLNSAIQNGSLERKLNGSIFTSDKIKTNVTVSGNSTLVCNTSL
NQPLKELNSCSWNDCKIKLVEGPYTQDDSDEVSNIQPNCNAFPTKAQQETSKDSREICDP
SPTSTTHQKSTEELSQKTQPKYNCIAITPPGKDASFTRERIKSGVGGCHLSNDSDAVVKS
YKFTSQQQNPAFSGLTSEIYAKRVVAEITTHEGETAASGIVPNNEVCSKEEVGNEAAAAA
AALSQSDPKNGFIGNDAHSPTDIKIICHKRCLDNLHCQEEVPAESGITNTSYKMDLKPKK
LAKCFLKSIYYGRKQLFLTSLRLHRNKKLKRTRKRCLIYKDIEKGVHLDDHRVIDQQTST
SEAVGLLSMEPKCRQRKRSRSSSNDNNIQHKVDNEKHNSGDYVTTVDERNRKFCAELATS
EQLQRCLYSAANQCNSRETDANGKGRRHEEFMSFLTRGLREVTVAQWDNIGLPEMELPGI
GSLRNNKIGYLLDEWDEEYDRGRRKKIKKSRQHFSGPNPFEDAASMRLQQKRKLKVDQTR
LGNQPLRI
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggcggggacctcatcggacggcggctgcgccgccgctcctctgcaggaggactcgctg
tattcgaggaggatcgagttccacacggcaaggaagccctcctctgccatgtccagaggc
ggcagcggagtgttttgcctcgaaaagctaattcccagctcggatccgcggagtactccg
gatgcgagtgccgaatccgcgttgaaggctccgtcggataggatttcggaggggagggac
ttttacgagcatggtttggatccggagctcagctttcggatcacctttcggagaatcggt
gctggtttggcgaatcttggaaatacttgttttcttaactcggttctccaatgcttgacg
tacactgagccgtttgctgcttatttgcaaagtgggaagcataaatcttcgtgtcatact
tctggattttgtgcaatgtgtgctcttcagaatcatgttatggtagctctacagtcgact
gggaagatattgtcaccgtttcatcttgttaagaacttgcggtgcatatctcgcaatttt
gctaaatttgaacaggaagatgctcatgaatatatggttcagttgcttgagtccatgcac
aaatgttgtttaccttctggagttcccatagagtctcctagtgcttatgaaaaaagtcta
gttcataagatatttggtggccatctcagaagtcaggtcaaatgcatgcagtgttcctat
ggctctaataaatttgatcccttcttagacttgagtttggaaattgtgaaggctgattct
ttgcagaaagcacttaaacatttcactgaggaggaggaactagatggtggggcaaggcag
tacgaatgccaacactgcaaaaagaaagtcagggcccgaaaacagcttactatccataag
gctccatatgtcctgacaattcatcttaagagatttagtccttacatccccggtcaaaag
attgatagaaaagtggagtttggaccaaaattagatttgaaaccatttgttagtgattcc
catatagcagctttaaaatatactctttacggtgtcatagttcacgcaggctggaatacc
cactcgggtcattaccattgttttgtccgtacgtccagtggcatgtggcattcccttgat
gataacaaggtatcccaagtctctgagaaaactgtattggaacagaaagcctatatgtta
ttttatgtacgagatagaactcctacagtcaagagctcagttaatgcagttcgcaaagat
aatgtagctgctaatgcctctggaaataaaatggtctctcaaccactcttgggtttgaat
agtgcaattcagaatggttctctggaaagaaaactaaatggttcaatatttacttctgac
aaaataaagaccaacgttactgtcagtggcaactcaactcttgtttgcaacacttcattg
aatcagcctttaaaagaattaaactcatgttcatggaatgattgcaaaattaagctggtg
gaaggcccatatacccaagatgacagtgatgaagtttctaatatccaaccaaattgtaat
gcatttcctacaaaagcacagcaagaaacatcgaaagattctagggagatttgtgatcca
agtccaacaagcaccactcaccagaaatcaactgaggaattgtcacagaaaactcagccg
aaatacaattgtattgccatcacacctcctggaaaagatgcctcttttaccagggaaaga
atcaagtcaggtgtcggaggatgtcatctttctaatgattcagatgcagtggtgaaatca
tacaaatttacttcccagcaacagaatcctgccttctctggactcacttctgagatatat
gccaaaagggttgttgcagaaattactactcatgaaggtgaaactgctgctagtgggatt
gttcctaataatgaggtatgcagcaaggaggaagtgggaaatgaagcagcagcagcagca
gctgctttaagccaatcagatcctaagaatggattcatagggaatgatgcacattctccg
acagatatcaagattatatgtcataaaaggtgcttggacaacctgcactgccaggaggaa
gttcctgcagaatcaggcatcacaaatacatcttacaagatggatctgaagccaaagaaa
cttgcaaaatgttttctgaagagcatctattatggtcgcaagcagctatttcttacttca
ttaagactgcataggaataagaaactcaagaggaccagaaaacggtgtctgatttataag
gacattgaaaaaggtgtacatttagatgaccacagggtaattgatcagcaaacgtcaaca
tctgaggctgttggattactaagcatggaaccaaagtgtcgtcaaagaaaaagatctcga
tctagttcaaatgacaacaatattcagcataaagtcgacaatgaaaaacataatagtgga
gattatgttactaccgttgatgaaaggaatagaaaattttgtgcagagcttgctacatca
gagcaacttcaaaggtgcttgtactctgcagccaaccaatgcaactcaagagaaacagat
gcaaatgggaaaggtcgacgtcatgaagaatttatgagttttcttactagaggcttaaga
gaagtcactgttgcacaatgggataacatagggttaccagagatggagctacctgggata
ggaagtttgaggaacaacaaaattggttatttgctagatgaatgggacgaggaatatgat
cggggaaggaggaagaaaataaagaaatctagacaacatttcagtgggccaaatccattc
gaggatgctgctagcatgagattacaacagaagaggaaactgaaggtggatcaaaccaga
ctgggaaatcaaccacttaggatatga
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