KEGG   Typha angustifolia (narrow-leaf cattail): 140760018
Entry
140760018         CDS       T11061                                 
Name
(RefSeq) uncharacterized protein
  KO
K12828  splicing factor 3B subunit 1
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140760018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tang03041]
    140760018
   03036 Chromosome and associated proteins [BR:tang03036]
    140760018
Spliceosome [BR:tang03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    140760018
 Complex B
    140760018
 Complex C
   U2 SnRNP specific factors
    140760018
Chromosome and associated proteins [BR:tang03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    140760018
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_ECM29 HEAT_EF3_N Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 140760018
NCBI-ProteinID: XP_072952881
LinkDB
Position
5:complement(344280..348092)
AA seq 1270 aa
MDSLDAEIARAQEERRKLEEVVPMNLTSVTFDADLYGGAGPDRFEGYERSIPVAEEDEEE
GDAGGRDLARRMASFTGPKSLKEIPRGAEADEESGFKKPQRIIDREDDYRRRRLQRIISP
ERNDPFASGEATPDPSVRTYADVMREQALQRQKEELLREIAKKKEEEKTKAEAEPAPAAQ
KRRNRWDQSQEADGGAAAKKAKASSDWDAPDSTPGIGRWDATPTPGRVADATPSLSRRNR
WDETPTPGRLADADATPTAGATPGATPAGMTWDATPKLPGLATPTPKRQRSRWDETPATM
GSATPTPGGTTPAAAFTPGITPVGGVDLATPTPNAINLRGSVTPEQYNLMRWERDIEERN
RPLTDEELDSMFPQEGYKILDPPASYVPIRTPARKLLATPTPLGTPLYAIPEENRGQQFD
VPKEAPGGLPFMKPEDYQYFGSLLNEDEEEQLSPEEQKERKIMKLLLKVKNGTPPQRKTA
LRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKIL
VVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVV
ASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLRSLVEIIEHGLS
DENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIP
LMDAVYASYYTKEVMIILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFF
RNFWVRRMALDRRNYRQLVDTTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKV
VANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICG
TIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSIL
GALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPARE
WMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTV
AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLE
DALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAI
EGMRVALGASVILNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVPSYPVLEDDGSNV
FSRPELVMFV
NT seq 3813 nt   +upstreamnt  +downstreamnt
atggactccctggacgcggagatcgctcgtgcccaggaggagcgtcgcaagctggaggag
gtcgtccctatgaacctgacatccgtcacctttgacgccgacctgtacggcggagccggg
cccgaccggttcgagggatacgagcgctccatccccgtcgcggaggaagatgaagaggag
ggtgacgccggcggccgcgatttggctcgccgcatggcctccttcactggccccaaatct
ctgaaagagattccacgcggcgctgaggcggacgaggaatccggattcaagaagccgcag
cggatcatcgaccgcgaggacgactacaggcggcggaggttgcagcggatcatctcgccg
gagcgaaacgatcctttcgcgtccggcgaggcgactccggacccgtctgttaggacttac
gcggatgtgatgagggagcaggcgctgcaacggcagaaggaggagctgctgcgggagatt
gcgaagaagaaggaggaggagaagaccaaggcggaggcggagccggctccggcggcacag
aagaggaggaacaggtgggaccagtcacaggaggcagatggtggggctgccgcaaagaag
gcgaaggcgagttcggattgggacgcacctgattccacccctgggataggaaggtgggat
gcgactccgaccccagggagggtcgctgatgccacgccttccttgtctaggaggaacaga
tgggatgagaccccgacgccaggtcggctggccgatgctgatgccacacccactgcaggt
gccacccctggggctacgccagctggcatgacctgggacgcaacgccgaagctccctggg
cttgcaacgccgactccaaagcggcagaggtcgcggtgggatgagacgcctgctaccatg
ggcagtgccactcctacgccgggcggcacaaccccggcagctgcatttactcctggcatc
actcctgtaggtggggttgatcttgcaaccccaacccctaatgcaattaaccttcgcggg
tccgtgacgccagagcagtacaatctgatgaggtgggagagggatattgaggagcggaac
cgtccgctgactgacgaagagcttgattctatgttccctcaggaaggttataagattttg
gacccacctgcatcttacgtgcctataaggactcctgcaaggaagcttttggcgacgccc
actcctttgggtactcccctgtacgcgatccctgaggagaatcgtgggcagcagttcgat
gttccaaaggaggcacccggtgggctgccattcatgaagccagaggattaccagtacttt
ggatctctgctgaacgaggatgaggaggaacagctgtccccagaggagcagaaggagaga
aagatcatgaagcttctgcttaaggtgaagaatggtacacctccacagaggaagacggca
ctgaggcagctcactgataaggcccgcgagtttggagctggaccattgtttaacaagatc
ctgccattgctcatgcagccgactcttgaggatcaagagcgacatcttctggttaaagtc
atagacagggtactgtataagcttgatgaattggtgcggccttttgtccacaagatcctt
gtggttattgagcctcttctgattgatgaagattactatgctcgtgtggaggggcgggag
attatctctaatcttagtaaagcagctggtcttgccaccatgattgcagctatgaggcca
gatattgataacattgatgagtacgtgaggaacactactgctagagctttcagtgtcgtg
gcttctgcccttggtattcctgctctcttgcccttcttgaaagctgtctgtcagagtaag
aagtcttggcaagctcggcacactggtattaaaattgtgcagcagattgctattctcatg
ggatgtgcagtccttcctcaccttaggtctcttgtggaaattatagagcatggtttgagt
gatgagaatcagaaggtgcgaactatcactgccctgtctcttgctgcacttgcagaagct
gctgcaccatatggtatagaaagctttgattctgtcttgaagcctctctggaagggtatc
agatctcatcgtgggaaggttcttgctgcattcttgaaggctattggctttatcatccct
cttatggacgcagtatatgcaagttattacacaaaagaagtgatgattattctaatcaga
gagttccagtcaccagatgaggaaatgaagaagatcgtacttaaagttgttaagcagtgt
gttagtacagagggtgtggaggccgactatattcggaatgatattcttccagagtttttc
cggaacttctgggttaggaggatggcactggatcggaggaattacaggcaactcgtggac
acaacagtggagatagcaaacaaggttggagttgctgatattgtagggagaatagtggag
gatcttaaagatgagagtgagccatacaggcgaatggtgatggaaacaattgagaaggtg
gtcgctaatttaggagcctcagatattgatgctcgtttagaagagctccttattgatggt
attttgtatgcgttccaagaacaaacaagtgatgatgctaatgtcatgcttaatgggttt
ggtgctgtggtcaacgcgcttgggcagcgggttaagccttatcttcctcagatctgtggt
accatcaaatggcggctgaacaacaaaagtgcaaaagttaggcagcaagcagctgatctt
atttcaaggatagccattgtcatgaaacagtgtcaggaagagcagctgatgggtcacttg
ggtgttgtcttgtatgagtacttgggagaggaataccctgaggtcttgggttccatcttg
ggagctctgaaagctatcgttaatgtcatcggtatgactaaaatgacaccgccgattaag
gatttacttcctcggttaactcctatcttaaagaacagacatgagaaggttcaagagaac
tgcattgaccttgtcggtaggattgctgatcgtggagctgaatttgttcctgctagggag
tggatgaggatttgctttgagcttctcgagatgttgaaggcacacaagaaaggaatcagg
agagcaacagtgaacactttcggttatattgcaaaagctattgggccacaggatgtcctg
gcaactcttttgaacaacttgaaggtccaagagcgtcagaatcgcgtttgcactacagta
gctattgccattgttgcagaaacttgttctccatttacagttctgccagcccttatgaac
gagtatcgtgtccctgaacttaatgtccagaatggggttctaaagtctctatcttttctc
ttcgagtacataggagagatgggtaaggattacatatatgctgttacaccattgctcgaa
gatgctttgatggacagagatttagtccataggcaaactgctgcttctgctgttaagcac
atggctttgggggttgcgggcttgggatgtgaggatgcgcttgtacatttgcttaactat
gtgtggccaaacatctttgagacatctcctcatgtcataaatgctgtaatggaggctatt
gaggggatgagggttgctttaggtgcatctgtcattttgaattattgtcttcaaggcctt
ttccatccggcaagaaaagtacgtgaagtgtattggaagatctataattcattatacatc
ggatctcaggatgcacttgttccttcataccctgtcttagaagatgatgggagcaatgtc
ttcagcagaccggagctagtgatgtttgtctga

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