KEGG   Typha angustifolia (narrow-leaf cattail): 140760543
Entry
140760543         CDS       T11061                                 
Name
(RefSeq) ubiquitin receptor RAD23d-like
  KO
K10839  UV excision repair protein RAD23
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03420  Nucleotide excision repair
tang04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    140760543
  09124 Replication and repair
   03420 Nucleotide excision repair
    140760543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:tang03051]
    140760543
   03400 DNA repair and recombination proteins [BR:tang03400]
    140760543
Proteasome [BR:tang03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    140760543
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      140760543
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin UBA_7 Rad60-SLD Rad60-SLD_2 CUE Crinkler UBA_RAD5A Dsc3_N UBA_3 Ubiquitin_5 TECR_N
Other DBs
NCBI-GeneID: 140760543
NCBI-ProteinID: XP_072953645
LinkDB
Position
5:join(8418376..8418441,8423541..8423702,8424468..8424521,8424744..8424826,8424905..8424967,8425782..8425959,8427453..8427602,8427690..8427761,8427855..8427902,8428008..8428120,8428296..8428374,8428595..8428711)
AA seq 394 aa
MKISVKTLKGSSFEIEAKPEDSVADVKKNIESTQGQSVYPADQQMLIYQGKILKDDTTLD
ENKVAENSFIVIMLSKSKGSSSGASTATKAPAAQATPTNTVAPVPPTPEPAPSPAPATTL
ASIPANAPTPTATAAPAPAVTVANEFDVYGQAASNLVAGSNLEQTIQQILDMGGGTWERD
TVVRALRAAYNNPERAVEYLYSGIPDNTEVAPVARAPTTGQPANPSIPAPEQVQPAVPST
GPNANPLDLFPQGLPNVGSNAGAGAGNLDIFRNSPQFRALLALVQANPQILQPMLQELGK
QNPQLLRLIQENQAEFLRLINEPAAEGAEGNILGQLAAAMPQTVQVTPEEREAIERLEAM
GFDRALVLEVFFACNKNEELAANYLLDHSDEFED
NT seq 1185 nt   +upstreamnt  +downstreamnt
atgaagatttcggtgaagaccctaaagggatctagcttcgagatcgaagcgaagcccgag
gactcggttgctgatgtgaaaaagaacattgagagtactcaagggcagagtgtctatcct
gccgatcagcagatgctcatatatcaagggaaaattctcaaggatgacacaaccttggat
gagaacaaagttgcagagaatagttttatcgtgataatgttgtcaaagagcaagggctca
tcgagtggagcttctactgctacaaaggcacctgcagctcaggctacacctactaataca
gttgcccctgtccctccaactccagaaccagctccttctccagcacctgccacaactttg
gcatcgatacctgccaatgcacctactccaactgccacagctgccccagctcctgcagtt
actgtggctaatgaatttgatgtatacggtcaagctgcgtcaaaccttgtcgctggaagc
aacttagagcaaacaatacaacagattcttgacatgggtggaggaacctgggagagggac
actgttgtccgtgctttacgtgctgcatacaataaccctgagagggctgttgaatatttg
tactctggtattcctgataacacggaagtcgctcctgtggctcgagcacctacaactggc
caaccagccaatccttcaattccagccccagaacaagttcagcctgcagttccatcaact
gggcctaatgccaatcccctggacctttttcctcagggccttccaaatgttggatccaat
gctggagcaggtgctggcaaccttgatatctttcgtaatagtccacagtttcgggccttg
ctggctttggtacaggctaaccctcaaatcctacagcctatgcttcaagagttgggaaaa
caaaacccacagcttttgcggttgattcaggaaaatcaagctgaatttcttcgtttaatc
aatgaacctgctgctgagggagcagagggaaatatattaggtcagttagctgcagcaatg
ccacaaacagtgcaagttactccagaggagcgagaagctattgagcgtcttgaagctatg
ggctttgaccgggcacttgttttggaggtgttctttgcatgcaacaagaatgaggaattg
gctgcaaactatcttttggaccacagtgatgaattcgaagattaa

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