Typha angustifolia (narrow-leaf cattail): 140760641
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Entry
140760641 CDS
T11061
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03030
DNA replication
tang03410
Base excision repair
tang03420
Nucleotide excision repair
tang03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140760641
03410 Base excision repair
140760641
03420 Nucleotide excision repair
140760641
03430 Mismatch repair
140760641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tang03032
]
140760641
03036 Chromosome and associated proteins [BR:
tang03036
]
140760641
03400 DNA repair and recombination proteins [BR:
tang03400
]
140760641
DNA replication proteins [BR:
tang03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140760641
DNA Replication Termination Factors
ELG1-RFC complex
140760641
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
140760641
DNA repair and recombination proteins [BR:
tang03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140760641
Check point factors
HRAD17(Rad24)-RFC complex
140760641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
Rad17
DNA_pol3_delta2
AAA_16
AAA_22
AAA_11
AAA_assoc_2
RCF1-5-like_lid
DNAX_ATPase_lid
ATPase_2
AAA_5
AAA_7
DUF815
RuvB_N
AAA_14
AAA_3
bpMoxR
AAA_30
AAA_24
ResIII
nSTAND3
AAA_19
MCM
AAA_18
Mg_chelatase
TIP49
AAA_28
SLFN-g3_helicase
ABC_tran
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
140760641
NCBI-ProteinID:
XP_072953783
LinkDB
All DBs
Position
5:join(6309563..6309740,6309828..6310044,6311468..6311547,6311636..6311795,6312632..6312713,6314300..6314429,6314522..6314585,6314690..6314758,6316351..6316450)
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AA seq
359 aa
AA seq
DB search
MAGTSSSSPMEIDDAAPPPAKPNTGKAPLVSETKSAPWVEKYRPQSLADVAAHRDIVDTI
DRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQI
QDFASARSLSFGAKPLVKLVLLDEADAMTKDAQFALRRVIEKHTKSTRFALICNHVNKII
PALQSRCTRFRFAPLDATHIRERLLHVINAEGLDVDEGGLTALVRLSTGDMRKALNILQS
THMASQHVTEEAVYLCTGNPMPKDIEQIAYWLLNESFTTGFRFISDIKMRKGLALVDIVR
EVTMFVFKIQMPSHVRVKLINDLADIEYRLSFACNDKLQLGSLISTFTNARCALVAAAK
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggcggggacgagctcgagctctcccatggagatcgatgacgccgcgccgccgccggcg
aagcccaacacgggaaaagcccctctcgtctccgaaactaagtccgctccttgggtcgag
aagtatcgcccccaatcccttgccgacgtcgccgcccaccgcgacatcgttgacacgatt
gatcggctcacaagcgagaataggctgccacatttgcttctctacgggccgccggggact
ggaaagacgtctactatcctggctgtggcgcggaagctgtacgggtcgcagtaccaaaac
atgatcttggagctcaatgcgtcggatgacagggggattgatgtcgttcggcagcagatt
caggattttgctagtgctcggagcctctcatttggagcaaagcctttggtaaagttggtt
ctattggatgaggcagatgcaatgaccaaagatgcacagtttgcattgcgtagagtgatt
gagaaacatacaaagagcacaagatttgcacttatctgtaatcatgtcaacaaaatcatc
ccagcattacagtcaagatgcactaggtttaggtttgccccacttgatgctacccacatt
cgagaacgcctgcttcatgtgataaatgctgaagggcttgatgtggatgaaggtggccta
acagcgcttgtacgattgagcactggtgacatgagaaaggctttgaacatattgcagtca
acacatatggcttctcaacatgttacggaagaagcagtctacctttgcactggaaatcca
atgccaaaagacattgagcagatagcctattggttactaaatgaatcatttacaactggc
ttcagatttatatctgatatcaaaatgaggaaaggactggccttggttgatattgtgaga
gaggtcactatgtttgtcttcaaaatacagatgccatcgcatgtccgagtaaagctaatc
aatgatttggctgatattgagtataggctgagttttgcatgcaatgataagttgcagctt
ggatcactcatctccaccttcacgaatgctcgttgtgctctggttgctgctgccaagtaa
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integrated database retrieval system
