Typha angustifolia (narrow-leaf cattail): 140760885
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Entry
140760885 CDS
T11061
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140760885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140760885
03019 Messenger RNA biogenesis [BR:
tang03019
]
140760885
Transcription machinery [BR:
tang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140760885
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140760885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
TFIIA
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
140760885
NCBI-ProteinID:
XP_072954054
LinkDB
All DBs
Position
6:join(9740976..9741367,9741915..9742379,9743555..9743717,9743855..9743965,9744835..9744903,9745419..9745505,9746607..9747485)
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AA seq
721 aa
AA seq
DB search
MEDPEGALSFDFEGGLDAAAPAAPIHPSAASSSLMLSDPTAVASTAGGVPVPSSGGGPGD
LPPGPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRMFGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVFQKIQHLSSFSYGSSNRFFQ
HRNTNYNQQGEKPQVPQASGIPSQSTAVKPPTVEQSNVQQPQLQTQLSQQQQQQQQQPPQ
QQQQQQQQQQQQQQQQSTDNQVQSIPNGLSNQANRTASPLPQGQSRYFIVKSCNRENLEI
SVQQGVWATQRSNEAKLNEAFESSENVILIFSINRTRHFQGCAKMTSKIGGYIGGGNWKY
AHGSAHYGRNFSVKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLL
YLEPDGELMAMLIAAESKREEEKAKGVSTDEAADNPDIVLFEDEEEEEEESEEEDESNGQ
APQGRGRGRGMMWQPHMPMVRGGGPMLGVRGFPPMMMGADGFGYNDGFGSPDLFGVPRVF
PPFGGPRFSGDFPRSGPMSGMFFPGRPPQPGVFPMGGLGMMMGPGRAPFMGGMPMAGLGR
GNRPMGVPPFLHPPPPPNSRAAKRDQRRPANDRYEAGPDPGNKGQDTIGIAGADEMGYHS
VKAQSEDKFGARSTFQNDESESEDEAAPRRSRHGEGKRKRRGSEGESTSDQWDIPSEHQN
Q
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccccgagggagccctaagcttcgacttcgagggcggcctcgacgccgccgcc
cctgctgccccgatccacccctctgcggcatcatcctccctcatgctctccgacccaacc
gcagtcgcctccacggcaggaggagtccccgtgccgtcgtccggcggcggccccggcgac
ctacctcccggtcccgggcggcgaagcttcaggcagactgtctgtcgccactggctccgt
agcctctgcatgaagggagatgcctgtggcttcctccaccagtatgacaaggctcgaatg
cccgtgtgccgcttctttcggatgttcggggagtgccgtgagcaggattgcgtctacaag
cacactaacgaagacattaaggagtgcaacatgtacaagttgggcttctgtccgaatggc
cctgactgtcgatatagacatgcaaagctgcctggacctccaccctctgttgaagaagtc
tttcagaagatccagcatctgagttcttttagttatggttcttcaaacagattttttcaa
cacagaaacactaactataaccaacaaggagagaagcctcaagttcctcaagcttctggg
atacctagtcaaagtacagctgtaaaaccaccaacagtggaacaatccaatgtacagcag
ccacaactgcaaactcaactgtctcaacaacaacaacagcagcagcagcagccgccgcag
cagcagcagcagcaacaacaacagcaacaacaacagcaacaacaacaatctactgataat
caggtgcagagtattcctaatggcttgtcgaaccaagccaatagaactgcatctcccctt
cctcaagggcaatctaggtattttattgttaaaagttgcaatcgagaaaatctggaaata
tcggttcagcagggtgtatgggcaactcaaagaagtaacgaggccaaacttaatgaagct
tttgaatcatcagagaatgtcattttgatattctcaatcaacagaactcgacatttccag
ggatgtgcaaagatgacttctaaaattggaggatatattggtgggggtaattggaaatat
gctcatggatctgcacattatggccgaaacttctcagtaaaatggcttaagctatgcgag
ttatcctttaacaaaacccatcatctcaggaatccatacaatgataatctaccagtgaag
atcagtcgggactgccaagaattggaaccttttattggtgagcagttggcttctctactt
tatctagagccagatggtgaactcatggcaatgctcattgctgcagagtctaaacgtgag
gaggaaaaggcgaagggggtcagtacagatgaggcagctgataatccagatattgttctg
tttgaggatgaggaagaggaggaagaagaaagtgaggaagaggatgaaagcaatggtcag
gctccccaagggagggggaggggaaggggaatgatgtggcagccacacatgccaatggtg
cggggtggcgggccgatgcttggcgtccgaggtttccctccgatgatgatgggtgcagat
ggttttggttataatgatggttttggctcaccagatctttttggtgttcctcgggttttt
cctccatttggtggcccaagattttctggtgacttccccagaagcggcccaatgtctggg
atgttctttcccggtaggcctcctcagcctggggttttccctatgggaggtcttgggatg
atgatgggtcctgggcgagctccgttcatgggtggcatgccgatggctggtcttggtcga
ggcaaccgtccgatgggggtgccacctttccttcatccgccacctccacctaatagtcga
gctgctaagagggaccagaggaggccggcaaatgacaggtacgaggcaggacctgatccg
ggcaacaagggccaggatacaataggaattgctggagcagatgagatgggttatcacagt
gtgaaggcccaatcagaggataagtttggtgccagaagcaccttccagaatgatgagagt
gagagtgaagatgaagcggctccaaggcgatctaggcacggagaaggcaagaggaagcgg
cgagggtctgagggagaatctacttcagaccagtgggatataccttctgaacatcagaac
cagtga
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integrated database retrieval system
