Typha angustifolia (narrow-leaf cattail): 140760917
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Entry
140760917 CDS
T11061
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
140760917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tang04121
]
140760917
Ubiquitin system [BR:
tang04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
140760917
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_6
Motif
Other DBs
NCBI-GeneID:
140760917
NCBI-ProteinID:
XP_072954102
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Position
6:complement(join(5642042..5642815,5643245..5643737,5646579..5647054))
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AA seq
580 aa
AA seq
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MPPHPEWTAAMFPDEVWEHVFSFLPSDADRNAAAASCHAWLRIERRSRRRVFVGNCYAVA
PAVAVARFPEARAVEVKGKPHFADFDLVPGDWGGGADEWVAAMAEGWPQLEELRFKRMVV
SDDCLEVIARSFRNFRVLGLAFCEGFSTAGLAAIAANCRNLRVLDLQENVIEDNCSHWLS
HFPESFTTLVHLNIACLPGEVNVPVLERLVSRCTNLKTLKLNHAIPLEKLVILLRKAPQL
VDLGTGRFSGEHHLDLYSKLESAFTGYKSLKSLSGTWEAVPAYLPAVYSVCEGLTSLNLS
YATTQNPELIKLVSRCKNLQRLWVMDFIEDDGLAAVASSCKLLQELRVFPSDPYGPQPVS
LTERGLVAISAGCPMLHSVLYFCNQMTNAALIAIALNRPNLTRFRLCIIEPQTPDYLTLQ
PLDAGFSAIVESCKDLRRLSVSGLLTDRVFKSIGAYADRLEMLSVAFAGDSDAGLHYILS
GCKSLRKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCSLTLGACKLLARKMPRLNVEVI
DERRGASWDSRPDDCPVEKLYVYRTVAGPRSDTPSCVWTV
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcatccggaatggacggcggcgatgttcccggacgaggtctgggagcacgtc
ttctccttcctcccgtcggacgccgaccggaacgcggcggctgcttcgtgccacgcgtgg
ctgcggatcgagcgcaggtcgcggcggcgggtcttcgtcgggaactgctacgccgtagca
ccggccgtggctgtggcgcggttcccggaggcgagggcggtggaggtcaaggggaagccg
cacttcgcagacttcgacctcgtgccgggggactggggcggcggtgccgacgagtgggtg
gcggcgatggcggaggggtggccgcagctcgaggagctgaggtttaagaggatggtggtg
tcggacgactgcctcgaggtgatcgcgaggtcgtttaggaactttcgggtgctcggcttg
gcgttctgcgagggcttcagtacggcggggctcgccgcgatagccgccaactgcagaaac
ctgagggtgctggacctacaggagaatgtcattgaggacaattgtagtcactggctcagt
cactttccagaatccttcactactttggtacatttgaacattgcttgcttaccaggggaa
gtaaatgtgcctgtccttgaacgtttagtgagcagatgtaccaatctcaagaccttaaaa
ctcaaccatgccattcctcttgagaaacttgttattctcttgcgcaaggctccacagcta
gttgaccttgggactggcaggttctcaggcgagcatcatttggatctctattccaaactt
gaatcagcatttacaggatataaaagcctgaaaagcctgtctgggacttgggaggctgtt
ccagcatacttaccagcagtatactcagtttgtgaaggtcttacatcactgaatttgagc
tacgctaccacgcaaaatcctgagctcataaaacttgtcagccggtgcaaaaatttgcaa
cgattatgggtaatggatttcattgaggatgatggccttgctgctgttgcatcctcttgc
aagctccttcaagaactgcgggtcttcccttctgatccatatggtccacagcctgtctct
ctcactgaacggggccttgttgccatctctgctggttgcccaatgctgcattctgtcctc
tatttctgcaatcaaatgaccaatgcagctctcattgctattgccttgaaccggccaaat
ctaactcgctttcgcctgtgcattattgaaccccagacaccggattatcttactctgcag
cctctcgatgctggatttagtgccattgtagaatcatgtaaggatcttcggcgcctctct
gtctcaggtctcctcaccgatcgtgtgttcaaatctataggagcctatgcagatcgactc
gagatgctgtcagttgcttttgcaggcgatagcgatgctggtctgcattacattctttct
gggtgcaagagtttaaggaagctagaaatcagggactgcccatttggagacaagcccttg
ttggccaatgctgccaagctggagacaatgcgatccctttggatgtcatcatgctctttg
accttgggggcgtgtaagctgctggcacggaagatgccacgcttgaatgtggaggtcatt
gatgagaggagaggagcatcttgggattcacgacctgatgattgccccgttgagaagctg
tatgtttaccgtacggttgcagggccgaggtctgacacgccatcttgtgtttggactgtt
taa
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