Typha angustifolia (narrow-leaf cattail): 140761016
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Entry
140761016 CDS
T11061
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140761016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140761016
Spliceosome [BR:
tang03041
]
Common components
Common spliceosomal components
SR proteins
140761016
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
140761016
NCBI-ProteinID:
XP_072954276
LinkDB
All DBs
Position
6:complement(join(5863961..5864008,5864099..5864185,5864261..5864288,5865969..5866073,5866146..5866237,5866421..5866477,5866608..5866657,5871435..5871492,5871599..5871645,5871751..5871859,5871955..5872029,5872262..5872327,5873673..5873759))
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AA seq
302 aa
AA seq
DB search
MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFIEFEDARDADD
AIRGRDGYNFDGHRLRVELAHGGRSYSSSSDRYSRYSSGGGRGGVSRRSEYRVFITGLPS
SASWQDLKDHMRRAGDVCFSEVFRDGRGTTGIVDYTNYDDMKYALRKLDDSEFRNAFSRS
YIRVKEYDSRRSPSHSYSRSRSPSYSRSRSPSRSKSPRKRPTRHSPSRSPPGSLSSQSRS
GSRGRSFSGSRSTSPFDSPHRDTKGSKNPGKQSSGRNRSISQSQSPAKSDRSRRHSVDSM
DD
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgagccagcagaactctctatgtgggcaacctacctggtgatattcgagag
agggaggtcgaggatctcttttacaagtatggaccaattgttgatattgatctgaagatt
cctccaaggcctcctggttatgcattcattgagtttgaagatgctcgtgatgctgatgat
gctattcgtggacgtgatggatataattttgatggtcacagactacgtgttgaacttgca
catggtggaagaagttactcttcatcttctgatcgctacagtaggtatagcagtggtggt
ggccgtggtggtgtctctaggcgctcagagtatcgcgttttcattactggtttaccttcc
tctgcttcctggcaagatcttaaggaccatatgcgtcgagctggtgatgtttgtttctct
gaagtgttcagagatggtcgtggcactacaggtatcgtggattatacaaactatgacgat
atgaaatatgcgttaaggaaactagatgactctgaattccggaatgcattttctcggtca
tatataagggttaaggaatatgattctcggcgaagccccagtcattcttacagccgaagc
agaagtcctagttatagccgaagcaggagtccaagccgaagcaaatctccaagaaaaagg
ccaacaaggcattcaccatctagatcaccaccaggatctctctcatctcagtctcgttca
ggatctagaggacgctctttctcaggatcaagatccacatctccttttgattctcctcac
cgcgacacaaaggggagcaagaaccctgggaagcagagttctggcaggaacaggagcatc
tcgcaatctcaatctcctgctaagtctgatcgcagccgccgccactcagttgattccatg
gacgattaa
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