Typha angustifolia (narrow-leaf cattail): 140761451
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Entry
140761451 CDS
T11061
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140761451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140761451
03036 Chromosome and associated proteins [BR:
tang03036
]
140761451
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140761451
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
140761451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
140761451
NCBI-ProteinID:
XP_072954877
LinkDB
All DBs
Position
6:join(6723810..6723828,6723979..6724176,6724317..6724598,6725423..6725995,6726255..6726482,6727129..6727748,6727880..6727967,6728068..6728128,6728753..6728891,6729079..6729195,6729341..6729470,6730442..6730504,6731073..6731680)
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AA seq
1041 aa
AA seq
DB search
MFGSTTRFGNLYFEFLVHPCGVQACIFCTRLVGILLLINHSKEGSLLSVQIVSFVLTVER
RSLLNMGCFATIAFGQPSSSPHGSQSMFGQTSSAITNLFAPKPFGNPNSFGAQTGGSMFG
GTSMRVFGQPSTPTFGASSAPSFGSPGPALGASTSPAIGSSSSSFGGSLLGQKPTFGGFG
SSSSQSSPFSSTFQQTQSAFGGNVFYSATPFGASSQPAFGATNTQAFGTISVPAFGATSS
PALGTTSTPAFGVATTPAFGSTSTPLLRSTGKAFGVSSAPVFGSTVTAALGASFGSSSTP
AFCVSTMAFGSSGVPAFGASSSPFSFGSTATFGQSTSAFGSTPGSIPSPFGARSSQQGVQ
AAIPPFGRSGSGQTALGGRVGGSRVARFTSTREAGGGTGRQPAAKLESISAMPEYKDKNH
EELRWEDYQCGDKGGANLSGQAAGGIGSAAATQPSPFGAAGASGQTAATSFSSSTSSKPF
AFQASTFGSTGFASTSTSLSNTPFSSSPSTFNTLLFGAPTGAAFGSSSSSPIFGGTTMPA
LSSSSSIFGSSMGTSSLSFAGSLTSGNSQPSALLESSTPSFGQTPSPPCQPSTAPQQSTP
IFGSSIFSTPSTGLGVSLFSNSTSPSTFRSNSDAGFGQTTPSFSRSFPAQDPSQTSSGFS
FENFGQTQPALSGGLGGVSNIFNQGTIGQPVGSQANIVVQPAPNTNPFGTLPVAPQMSID
HVRSASSVHFGISSMPVAEISLPVRTFSMSVPRHLSQRRIGLPPRRYYPKTDGRKVPFFA
ADEVSPTPRADGFVLPRENPRALIIHPIEKWASPNSQEGKISQEPSTLSVIESFAEEDDD
SHFSAEQNCAPTPPLKQSQSPKANGGGHDNHTQKGSQDATLHEHGTDTATLMPKLQHYDY
YTEPQLQELAAKERVNPGFCRNVKDFVVGRHGYGSIKFYGETDVRKLDLESIVQFNNREV
IVYKDESRKPPVGQGLNKPAEITLLNVTCMNKTTGKQYTDGPQVDKYKEMLMKKAEEQGA
EFVSYDAAKGEWKFRVKHFSI
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctctaccactcgtttcgggaacctctactttgagttcttggttcacccttgt
ggtgtgcaagcgtgcatattttgtactagattagtgggaatcttgctactgatcaaccat
tcgaaggagggaagcttactttctgtccaaattgtttccttcgtgttgactgttgagaga
agatcattacttaatatgggatgttttgctaccattgcttttgggcagccttccagtagc
ccacatggttctcagtccatgtttgggcaaacgagcagtgctattactaatctcttcgct
ccaaaaccatttggcaatccaaattcttttggtgcgcagacagggggctcgatgtttggt
ggtacatcaatgcgcgtatttggacaaccttcaacacctacatttggtgcttcatccgca
ccatcttttggaagtcctggtcctgccttaggtgcatcaacatctcctgcgattggcagt
tcttcatcttctttcggaggttctttgcttggccaaaagccaacttttggaggttttgga
tcgtcatctagccagtcaagtccatttagtagcacatttcagcaaacacaatcagcattt
ggaggtaacgtattttactcggccacaccttttggtgcttctagtcaacctgcatttggt
gctacaaatacccaagcttttggtactattagtgtccctgcatttggtgcaacaagttcc
cctgcccttggtaccacaagtacgcctgcgtttggtgtggcaactaccccagcatttgga
tccacatcaaccccgttgcttcgtagtacgggaaaagcatttggggtttcaagtgcccca
gtatttggatcaacagtgacagcagccttgggtgcttcatttggttcttcaagcactcct
gcattctgtgtatctactatggcttttggatcttctggtgttccagcatttggtgcatca
agttctcctttcagttttggctccacagcaacctttggacaatcaacatctgcatttggt
agcactcctggaagcattccatcaccttttggtgctcggagttcccagcaaggtgtgcaa
gcagcaattcctccatttggtaggagtggttctggacagacagctttaggaggtcgagta
ggaggaagcagagtagctcgtttcacctccacacgggaggctggtggtggcactggtagg
cagccagctgcaaaattggagtcaatttcagccatgcccgagtataaagataagaaccat
gaagaattgagatgggaggactatcaatgtggcgataaagggggagcgaatctttctgga
caggctgcaggtgggataggctctgcggctgcaacacaacctagcccttttggtgccgca
ggggcatctggtcagacagctgcaacttctttctcctcttctacttcttcaaaaccattt
gcatttcaggcctcaacatttggttcaactggctttgcttccacatccacttcgctttca
aacaccccatttagttcgtcaccatcaacttttaatactttattgtttggagcacccact
ggtgctgcttttggttcaagttcttcatcaccaatttttggtggaacaaccatgccagca
ttaagttcttcatcctcaatttttggttcctcaatgggaacctcaagtttgtcatttgct
ggtagcttgacctctggcaacagtcaaccatctgcgctgctcgaatcctccactccatca
tttgggcagacaccctcccctccctgtcagccatctacagcacctcagcagagcacaccg
atttttggttcaagtatatttagcacaccatcgactggacttggagtaagtctctttagc
aattcaacctcaccttcaacatttcgctcaaactctgatgcagggtttggtcaaacaaca
ccttcgttctcaagaagttttccagcacaagacccttctcagacatcaagtggcttttca
ttcgaaaactttggtcagacgcaaccagccttgtcgggtggtctaggaggcgtttccaac
atcttcaatcaaggcacaattgggcaacctgttggaagtcaagcaaacatagttgtgcaa
ccagctcccaatacaaatccgtttggtacacttccagtagcacctcagatgtccattgac
catgtcagatctgcttcttctgttcattttggtatttcaagcatgccggttgctgaaatt
tctcttccagttagaactttctccatgtcggttccaaggcacttgtctcaaagaaggata
ggattaccaccaaggagatattatccaaaaactgatggtcgaaaggtacctttttttgct
gctgatgaagtttcgccaacaccaagagcagatggttttgtccttcctcgggagaatcca
agggcactaattattcatccaattgagaagtgggcatcaccaaatagtcaagaaggtaaa
atttcacaagagccatctactttgtctgttattgaatcttttgcagaagaagatgatgat
tctcacttctcggcagaacaaaattgtgctcctacgcctccgttgaaacaatctcagagt
ccaaaggcaaatggcggcggtcatgataaccatacccagaaggggtcccaagatgcaact
ctacatgagcatggcacagacactgcaacgctgatgcccaagctccagcattatgattat
tacactgagcctcaactccaggagctggctgccaaagaacgtgtcaatccaggcttctgc
cgcaatgttaaagatttcgtggttggtaggcatggctacgggagcatcaagttctacggt
gaaactgatgtacggaagcttgacctcgagtccattgtccagtttaacaaccgcgaagtg
attgtttacaaggatgagagcagaaagcccccagtcgggcagggtctcaataagcctgca
gagataacgcttcttaacgttacatgcatgaacaagacaacagggaaacagtatacagac
ggtccccaggtcgacaagtacaaggagatgctgatgaagaaggctgaggagcagggtgca
gaatttgtatcctatgacgcggcgaagggggagtggaagttcagagtcaagcacttcagc
atctaa
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