KEGG   Typha angustifolia (narrow-leaf cattail): 140761790
Entry
140761790         CDS       T11061                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03020  RNA polymerase
tang03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    140761790
  09124 Replication and repair
   03420 Nucleotide excision repair
    140761790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tang03021]
    140761790
   03400 DNA repair and recombination proteins [BR:tang03400]
    140761790
Transcription machinery [BR:tang03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     140761790
  RNA polymerase III system
   RNA polymerase III
     140761790
  RNA polymerase I system
   RNA polymerase I
     140761790
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      140761790
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 NucS_C Mrr_cat OB_RNR_1st
Other DBs
NCBI-GeneID: 140761790
NCBI-ProteinID: XP_072955388
LinkDB
Position
6:complement(join(4164911..4165036,4167035..4167148,4167334..4167513,4169673..4169870))
AA seq 205 aa
MASEDEISRLFRIRRTVMQMLRDRGYLVLDVEVNMNKRQFLDKFGEGVRRDDLVINKSKK
NGPSDQIYVFFPNEPKVGVKQIKQYVERMKSDNVMNGILVVQQNLTPFARSSMQEVSQKY
HLEVFQETELLVNIKDHVLVPEHQLLTPEEKKTLLERYTLKETQLPRIQVTDPVARYYGL
KRGQVVKIIRPSETAGRYVTYRYVV
NT seq 618 nt   +upstreamnt  +downstreamnt
atggcgtcggaggacgagatcagtcgcctttttcgtatccggcggacggtgatgcagatg
ctgagggaccgggggtacctcgtcctcgatgtggaggtcaacatgaacaagcgccagttc
ttggacaagtttggcgagggtgtcaggcgcgacgacctcgtcatcaacaagtccaagaag
aatggcccctcggatcagatttatgtgttctttccaaatgaaccaaaagttggtgtgaag
caaattaagcagtatgttgaacgaatgaaatcggataacgtgatgaacggaatattagtt
gttcagcaaaatcttactccctttgcaagatcatccatgcaagaagtttctcaaaaatat
catttggaggtttttcaggagacagagctcttggtcaacattaaggatcatgtgcttgtt
ccagagcatcaattattgactcccgaggagaagaagacattgttggagcgctatacccta
aaagaaactcagcttcctcgaattcaggtgacagaccctgtagctagatactacggccta
aagcgtggacaggttgtaaagatcatccgacccagtgagactgcaggccgatatgtaact
tacagatatgttgtctga

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