KEGG   Typha angustifolia (narrow-leaf cattail): 140762205
Entry
140762205         CDS       T11061                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03020  RNA polymerase
tang03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    140762205
  09124 Replication and repair
   03420 Nucleotide excision repair
    140762205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tang03021]
    140762205
   03400 DNA repair and recombination proteins [BR:tang03400]
    140762205
Enzymes [BR:tang01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     140762205
Transcription machinery [BR:tang03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     140762205
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      140762205
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 140762205
NCBI-ProteinID: XP_072955948
LinkDB
Position
7:complement(join(12250762..12250881,12252097..12252519,12252853..12253152,12253309..12253452,12253543..12253596,12253667..12253736,12253829..12253944,12254099..12254194,12254282..12254359,12254443..12254568,12254757..12254858,12254962..12255117,12255299..12255415,12255558..12255665,12255936..12256012,12256093..12256165,12256270..12256407,12256500..12256544,12256637..12256757,12256866..12256952,12257037..12257101,12258511..12258708,12258849..12259139,12259218..12259439,12260762..12261001))
AA seq 1188 aa
MEEEYAGMEMEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA
DIEIRPESQHNPGRQSEFSETLHKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYS
APLYVDVKYRVIKKGHDCEEVTETQEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGEC
PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMF
VRMLSRTSAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMM
ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCE
TKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSY
VQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTL
SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN
PILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVRTLRRLRRQIDVNTE
VGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKKDIRALQQRESPEEGWHDLVAKG
FIEYIDTEEEETTMISMTINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDH
NQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNREN
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDSQGQASRYTRRDHSTCLRH
SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI
EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
YQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
RDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRG
CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKPSKDQKRKGA
NT seq 3567 nt   +upstreamnt  +downstreamnt
atggaggaggagtacgcggggatggagatggaggaggacgaggaagaagagattacgcag
gaggacgcgtgggcggttatcagcgcctacttcgaggagaagggtctggtgcggcagcag
ctagattcgttcgacgagttcatccagaacactatgcaggagatcgtcgatgagtccgcc
gacatcgagattcgccccgagtcccagcacaaccctggccgccaatccgagttctctgag
acgctgcacaagattagctttggacagatttatttgagtaggcctatgatgacagagtct
gatggagaaacagctacattgtttcctaaagctgcaaggcttagaaatttgacatactca
gctccattatatgttgatgtaaaatatagagttataaagaaagggcatgactgcgaggag
gttactgagactcaggaatatccaaaagtatttattggaaaggtgcctatcatgttgcgt
tctagttattgcacactatatcagcagtctgaaaaagatctaactgaacttggagaatgt
ccgtatgatcaaggcggatatttcataattaatgggagcgagaaggttcttattgcccag
gaaaagatgagcaccaatcatgtttatgtatttaagaaaagacaacctaacaaatttgct
tatgtagcggaagtcagatctatggctgagaatcagaacagaccagcaagcagcatgttt
gtgcggatgctctcccgtaccagtgcgaaagggggttcctcaggacagtatattcgagct
acccttccatatatacgagcagatattccaataatcattgtgttccgagcattaggtttt
gttgctgacaaagacatactagaacatatatgttatgacttctctgatacgcaaatgatg
gaactgttgcggccttctctagaggaagcatttgttatacaaaatcagcaggtggcattg
gactacataggaaagcgtggggcgacagttggtgtaacgagggagaagagaattaagtat
gcgaaagaaattcttcaaaaggaaatgttacctcatgttggtgttggtgaattctgtgaa
accaaaaaagcatactattttggatacatcattcatcgtctattgctctgtgcgctgggc
cggagaccagaagatgatagggaccattatggcaacaaaaggttggaccttgctggtcct
ttacttggaggcctcttcagaatgctttttagaaagctgacaagggacgtgagatcatat
gtgcaaaagtgtgtagataatggaaaagaggtaaatttgcaatttgctatcaaagctaaa
actatcaccagtggtcttaagtactcccttgctactggaaactggggacaagcaaatcaa
gctggtacaagagcaggggtgtcacaggtgttgaatcgtttgacatatgcttctacatta
tctcacttgcggaggttgaactctcccataggacgtgaaggtaagttggcaaaacctcgg
cagttgcacaactctcattggggaatgatgtgtcctgcagaaacacctgaaggacaggct
tgtggattggttaaaaatcttgcattgatggtatacatcactgttgggtctgctgcaaat
cctattttggaatttttagaggagtggggcactgaaaactttgaggaaatatcacctgct
gttattccccaagcagctaaaatttttgttaatggctgctgggttggtatccatcgaaat
ccggacctcttggttagaaccttgagacgtttgagaagacagattgatgtcaacactgaa
gttggagtggtccgagatattcgtcttaaagaactgcggctttatacagattatggccgc
tgcagtcgtccattatttatagtggaaaatcaaaggttacttattaagaagaaagatatc
agagccttgcagcaaagggaatccccagaagaaggttggcatgatctagttgcaaaagga
tttatagagtacatagataccgaggaagaggaaactacaatgatatccatgaccattaat
gatcttgtgaatgcaagacagaatccagaggaagcttattctgaaacttacacccactgt
gagatacatccgtcattaattctgggtgtatgtgcatccatcattccttttcctgaccac
aaccagtcacctcgtaatacatatcagtcagcaatgggaaaacaagccatgggaatctat
gttaccaactatcaactacgaatggacacattggcctatgttctgtattatccacagaaa
cctcttgttacaactcgtgcaatggaacatttgcactttaggcagttgccagctggcatt
aatgcaattgttgctattgcgtgctactctgggtataaccaagaagattctgttattatg
aaccaatcttcaatagatcgtgggttcttccgctcattatttttccgctcgtaccgagat
gaggaaaagaagatgggaactcttgttaaagaagattttgggcgcccaaatagggagaat
actatgggtatgcgacatgggtcttatgacaaactagatgatgatggccttgcacctcct
ggcacaagagtctctggtgaagatgtgattattggaaagacatccccaattgcccaagat
gattctcaaggacaagcttcgagatacacacgacgtgatcatagtacttgtttacgccac
agtgaaagcgggatggtggatcaggttctattaactacaaatgctgatgggttgaggttc
gtcaaagtaagaatgagatcagttcggattcctcaaattggagacaaatttagtagtagg
catggtcagaagggaactgttggaatgacctatacacaagaggacatgccatggactatt
gaaggcatcacacctgatattattgtgaatccacatgctattccatctcgcatgaccatt
ggtcaacttattgaatgcattatggggaaagtagctgctcatatggggaaggagggagat
gctactccttttactgatgtcacagtggataacattagcaaagctcttcataagtgcgga
tatcagatgcgtggatttgagaccatgtacaatggtcatactgggcggaagttgactgcc
atgattttcctgggtcctacttactatcagaggctgaagcatatggtagacgataagatc
cactcaagaggacgtggccctgtccagatccttaccaggcaaccagcagaggggcgatct
cgagatggaggtttacgctttggagaaatggaacgagattgcatgattgcacatggggct
gcttttttcctgaaggagaggttattcgatcaaagtgatgcttatagggtccatgtgtgt
gaaaaatgtgggctcattgccattgctaacctcaagaagaattcctttgagtgtagaggt
tgcaagaacaagactgacattgttcaagtgcatataccttatgcttgtaagctgcttttc
caagagctcatggccatggcaatagctccgagaatgcttacgaaggaagtgaagccatcc
aaagatcaaaagaggaaaggggcttaa

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