Typha angustifolia (narrow-leaf cattail): 140762207
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Entry
140762207 CDS
T11061
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03030
DNA replication
tang03410
Base excision repair
tang03420
Nucleotide excision repair
tang03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140762207
03410 Base excision repair
140762207
03420 Nucleotide excision repair
140762207
03430 Mismatch repair
140762207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tang03032
]
140762207
03036 Chromosome and associated proteins [BR:
tang03036
]
140762207
03400 DNA repair and recombination proteins [BR:
tang03400
]
140762207
DNA replication proteins [BR:
tang03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140762207
DNA Replication Termination Factors
ELG1-RFC complex
140762207
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
140762207
DNA repair and recombination proteins [BR:
tang03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140762207
Check point factors
HRAD17(Rad24)-RFC complex
140762207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Rad17
Mg_chelatase
AAA_16
Viral_helicase1
RuvB_N
nSTAND3
AAA_11
RCF1-5-like_lid
AAA_5
AAA_28
AAA_assoc_2
AAA_19
AAA_30
AAA_24
MeaB
AAA_25
AAA_3
DNAX_ATPase_lid
AAA_18
bpMoxR
ABC_tran
RNA_helicase
KTI12
IstB_IS21
NTPase_1
NPHP3_N
T2SSE
SLFN-g3_helicase
DO-GTPase1
Motif
Other DBs
NCBI-GeneID:
140762207
NCBI-ProteinID:
XP_072955950
LinkDB
All DBs
Position
7:join(15429241..15429414,15429537..15429643,15429727..15429828,15429920..15430115,15430424..15430552,15430634..15430828,15430916..15431026)
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AA seq
337 aa
AA seq
DB search
MASSSSPPPSSSAGSNYDIPWVEKYRPAKMADVVGNSDAVSRLQVIARDGNMPNLILSGP
PGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLLPGRHKI
VILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCALVRFSRLSDQE
ILGRLMVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQ
PHPLHVKSMVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFL
KEAGFAHMRICDGVGSLLQLSGLLAKLSLVRETAKAP
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcatcctcccctcctccttcctcctccgccggcagcaactacgacatccca
tgggtcgagaagtaccgacccgccaaaatggccgacgtagtcggcaactccgacgcggtc
tctcgcctccaagtcatcgcccgagacgggaacatgccgaatctcatcctctccggccct
ccaggaactgggaagactacgagcatacttgcacttgctcatgagctcttaggacctaat
taccgggaggcggttcttgagttgaatgcatctgatgataggggtattgatgtagtgagg
aacaagattaaaatgttcgcccagaagaaagtgaccctcttgcctgggcgtcacaagatc
gttattttggatgaggcggacagcatgacatctggggcacaacaagctttgaggaggacg
atggagatctattcaaacaccacgaggtttgctctcgcgtgcaacacatcatccaaaatc
atagagcccattcagagtagatgtgctcttgttcgcttctcaaggttgtctgatcaagag
attcttggtcggcttatggtcgtagtggcagctgagaaggtcccttatgtcccagaaggc
cttgaggccatcatattcactgctgatggtgatatgaggcaagctttgaacaatctgcag
gctaccttcagtgggttccgttttgttaatcaggagaatgtgttcaaggtttgtgatcaa
cctcatcccttgcatgtcaaaagtatggttcgtaatgtacttgagggaaagtttgatgat
gcttgtgctggtctgaagcaactttatgatctgggctattctcccactgacataattacc
actctcttccgcattataaaaaactatgacatggccgaatatctgaagctggaattcttg
aaggaagcaggatttgcccatatgagaatctgtgatggtgttggctcactgcttcagctc
tctggtcttctggctaagctttcgctggttagggagactgcaaaagccccatga
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