KEGG   Typha angustifolia (narrow-leaf cattail): 140762225
Entry
140762225         CDS       T11061                                 
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
  KO
K10779  transcriptional regulator ATRX
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:tang00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tang03000]
    140762225
   03036 Chromosome and associated proteins [BR:tang03036]
    140762225
Transcription factors [BR:tang03000]
 Eukaryotic type
  Zinc finger
   Cys4 GATA-factors
    140762225
Chromosome and associated proteins [BR:tang03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    140762225
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII ADD_ATRX DUF1737 zf-4CXXC_R1
Other DBs
NCBI-GeneID: 140762225
NCBI-ProteinID: XP_072955977
LinkDB
Position
7:join(12511261..12511605,12517822..12517884,12517963..12518058,12518148..12518240,12521051..12521241,12521340..12521583,12524134..12524232,12527589..12527672,12527825..12528361,12528614..12528894,12531226..12531316,12531402..12531605,12532580..12532699,12535369..12535535,12537914..12538055,12538993..12539142,12539239..12539294,12539390..12539696,12540013..12540148,12541609..12541670,12542181..12542413,12543622..12543825,12543910..12543988,12544117..12544364,12544617..12544989)
AA seq 1534 aa
MESSSEMEKELKKLEPVQLNEQEKVEILVIEEISNKEEYVIKQVHEFNESVPTGEHKEGN
DVELEDYEEKGEDEGLVEPNIMEEDLGSDSYDMFSGDSDSDQKPTSGNEDESNFEVPLTD
AEIEELIAEFLEIESKAAEAQESLERESLAQVESEVREELSENLHGDALEMAVSTEMKTF
KEEWEAVLDDLETQSALLLEQLDGAGIELPSLYKWIEGQVPNGCCTEAWKKRAHWVGSQV
TGEVTESVRDAEEYLHSCRPVRRKHGRLLEEGASGFLAGKLSIKDTENLIENPEKTWSSF
NELIQSRNCAESNSFGSSSWASVYLASTPQQAANLGLKFPGVDEVEEIGEVEGVDADSIK
FIDEIELSAEQKRNYRKVREEDDAHFTKKLQHHLKQRRKKYRKYQDPIENSGYITVSNHC
SQSSFQNPTSLEDCVSDIGNGYNLGQESNPCMISSENKHEGNATSITRKHSREEEDAEGV
NKRCRAAIIDIDDDVRGEDERTTSDDHKNCQNSPSQVKKVVDVIDVDVLPSPSPRCSMKD
LRKAFNCTACLEVLKASDVHQHPLLEVIVCGSCKFLLIEKIRLGGPGSGGYCRWCGKGID
LISCNLCKMLFCSMCIARNFGEEYLSEVKSSGWHCCCCSPTLLRQFTSECKRAIGGLVVS
SSESDSALSNAEMDFTIGSKRRRKKRIRRILDDTELGEETKNKIAIEKARQEHLKSMQVE
SVSTLLCKSLGSVIGTAEDGVFGDATEGYIVNLAREKDEEPVRIPTSISPKLKPHQVAGI
RFMWENVIQSVKKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSTDLGLRAALVVTP
VNVLHNWKQEFVKWQPRELKPLRVFMLEDVNRERRPYLLSKWRVKGGVLLIGYAAFRNLS
LGRHIKDRNAATEICQALQCGPDILVCDEAHMIKNTRADITQALKQVKTQRRIALTGSPL
QNNLMEYYCMVDFVREGYLGSSHEFRNRFQNPIENGQHTNSTKDDVKIMNQRSHILYEQL
KGFVQRMDMNVVKRDLPPKTVFVVTVKLSPLQRKLYRRFLDVRGFTSDKVSSDKPIRRSC
FFAGYQTLAQIWNHPGLLQMAKEHRNYLRREFAVENFLVDESSSDDNMDNDLLNGEKQKM
KSDLLPKKGDTVFCDEESNWWGDLLDEKIYKEADYSGKMILLLDILSMSSEVGDKALVFS
QSLTTLDLIEFYISKLPRKGTEGKYWKQGKDWYRLDGSTHCSERQKLVEKFNEPTNRRVK
CILISTRAGSLGINLHAANRVIVVDGSWNPTYDLQAIYRVWRYGQDKPVYAYRLMAHGTM
EEKIYKRQVTKEGLAARVVDRQQVHRTMSKEEMLHLFDFGDEEALEHNQESPISVYQDKC
GEGGSSGTPNSHVVGCSDRLMRSLLSRHYPRWIANYHEHESLLQENEAERLTKEEQEMAW
LNYQRSLEWEEVHRTVFDEPDRKLVVDDIPAEGIPSQQAKGTSRSRPVIQRKCSNLAHLL
TLRSQGTKSGSSTVCGECAQEISWENLNRDGRSR
NT seq 4605 nt   +upstreamnt  +downstreamnt
atggagagttccagtgagatggagaaagaactgaagaaactggaacctgtgcaattaaat
gagcaggagaaagtggaaattctagtgattgaggaaatttcaaacaaagaagaatatgta
attaagcaggtacatgaatttaacgaaagtgttccaacgggggagcataaggagggcaat
gatgtagaactagaagattatgaagaaaagggagaagatgaaggactggtagaaccaaat
attatggaggaagatttaggaagtgactcgtatgacatgttcagtggtgattcagatagt
gatcaaaaaccaacttctggaaatgaagatgaatcaaactttgaggtgcctttgactgat
gcagaaattgaagaactaattgcagagtttcttgaaattgagagcaaggcagcagaagca
caagaatcacttgagagagaatcactagcccaagttgaaagtgaagtaagagaggagcta
tctgaaaatcttcacggggacgcattggaaatggctgtgtcaactgaaatgaaaacattc
aaagaagaatgggaggctgtactagatgatttagagactcaaagtgctctgttattggag
caacttgatggagctggaattgagcttcctagcttgtacaaatggattgaaggccaagtt
cctaatggatgttgtactgaagcatggaagaaaagggctcattgggtaggctcgcaagtt
actggtgaagttactgaatcagttagagatgcagaagaataccttcattcctgccgaccg
gtaaggagaaagcatggtaggctgctggaagaaggtgctagtggctttctagctggaaag
ctttccatcaaagatactgaaaaccttattgaaaatcctgagaaaacttggagttcattc
aatgagcttattcaatcccgtaactgtgccgagagcaattcatttggaagtagtagttgg
gcctctgtttatctggctagtactccacagcaagctgcaaacttaggtctgaaatttcca
ggagttgatgaggttgaggagattggcgaagtggagggtgttgatgctgattctattaaa
tttatagatgaaattgaactttctgcggagcagaagagaaactacagaaaggtacgggaa
gaggatgatgcacattttacaaagaaactgcaacatcatctgaagcagaggaggaaaaaa
tataggaagtatcaggatccaatagagaactcgggttatatcactgtgtcaaatcattgt
tcgcaatcatcttttcagaatcctacctcattggaagattgtgtatctgatattggtaac
ggttataatttaggtcaagaatcaaatccctgtatgatctcaagtgaaaataagcatgaa
ggtaatgctactagcattacccgtaagcactcgcgcgaagaagaagatgcagaaggggtc
aataaaaggtgtagggctgctatcatagacatcgacgatgatgtgcgaggagaggatgag
aggacgacttcagatgaccataaaaattgtcaaaattcaccgtcacaagttaagaaggtg
gttgatgtgatagatgttgatgtgcttccttcaccaagtcctcgttgcagtatgaaagat
cttcgtaaagcttttaattgtactgcttgcttggaagtcttgaaagcctctgatgtgcac
caacatcctctgctagaagtcattgtttgtggatcttgtaaatttcttctgattgagaag
attcgccttgggggtcctggttcaggtggttattgcaggtggtgtggaaagggtattgat
ctcattagttgtaacttgtgtaagatgctattctgcagtatgtgtattgcgaggaatttt
ggtgaagaatacttatcggaagtgaaatcctctggttggcattgttgttgctgctcaccc
actctattgcgtcagttcacatcagaatgtaaaagagccattggcggtttggtggtttct
agttctgaaagtgattcagcgctttcaaatgctgaaatggatttcacaattggaagcaaa
agaagacgaaaaaagaggataagaagaatacttgatgatacagaacttggagaggaaacc
aagaataaaattgcaatagagaaggctaggcaagaacatctaaagtcgatgcaagtggaa
tctgtgagcacactactctgtaagagtttgggaagtgtaatcgggacagcagaagatggt
gtctttggggatgctacagaaggttatatagtgaatttagccagggaaaaagatgaggaa
ccagtgaggattccaacaagtatttctccaaagttgaagccccatcaggttgcgggtata
aggtttatgtgggaaaatgtcattcaatctgtcaaaaaggtgaaatctggggataaaggt
cttggatgcattttagctcatactatgggccttggtaaaacatttcaggttattgcattt
ctatatactgctatgagaagcactgatttaggactgcgagcagcacttgtagtgacacct
gttaatgttcttcataactggaagcaagagtttgtaaagtggcaacctagggaactaaag
cctcttcgtgtatttatgttggaagatgtcaacagggagagaagaccatatttgctgtca
aaatggagagttaagggtggagtacttctaataggatatgcggctttccggaacttgtcg
cttggaaggcatattaaggataggaatgctgcaactgagatttgccaggctctacagtgt
ggacctgatatacttgtctgtgatgaggcgcacatgattaagaacactagggctgatata
actcaagctttgaagcaagtaaaaacacaaagaaggattgcattaacaggatctcctttg
cagaataatctgatggaatattattgtatggttgattttgtgagggagggatatcttgga
agcagtcatgaatttaggaaccggttccaaaaccccatagaaaatgggcagcacacaaat
tctactaaagatgatgtgaagatcatgaaccaaagatcacacatcttatatgagcaattg
aagggatttgtccagcgaatggacatgaatgtggtaaagagagatctaccaccaaaaact
gtttttgttgtcactgtgaagctgtctccactgcagaggaaattatacagaagattctta
gatgtccgtgggtttacaagtgacaaagtttcttctgataaacctattaggcgcagttgc
ttctttgctggttatcaaacattggcacagatatggaaccatcctgggctcttgcagatg
gctaaagagcatagaaattacttacggcgagaatttgctgttgaaaactttcttgtagat
gaaagctccagtgatgataatatggacaatgacttgcttaatggagagaagcagaagatg
aagagtgaccttttgcccaagaagggtgatactgtcttctgtgatgaggaaagcaactgg
tggggagatcttttggatgagaagatatataaggaagctgattatagtggaaaaatgata
ttgctcctcgatatcctctctatgagttctgaggtgggtgacaaggcattggtatttagc
cagagcttgacaactctagacttaatagaattctatatatcaaagttaccgcggaaagga
acagaagggaagtattggaagcaagggaaggactggtataggttagatggaagtacacac
tgttctgagagacagaagcttgtggagaaatttaatgagcctacaaataggagagtcaag
tgcatattgatatcaactcgtgctggatctctgggcattaaccttcatgctgcaaatcgt
gttattgttgtcgatggttcttggaacccaacatatgacttgcaagctatatatcgggtt
tggagatatgggcaagacaagcccgtctatgcttatcgattgatggcacatggaaccatg
gaagagaaaatatataaacgacaggtgacaaaagaaggactagcagcaagagtagtggat
agacaacaagtacatagaacgatgtctaaagaggagatgctgcatctgttcgacttcggt
gatgaggaagcactggagcataaccaagaaagtcctatctcagtgtatcaggataaatgt
ggtgagggtggatcttcaggaacgccaaattctcatgtagttggatgttcagacaggctc
atgaggagcttacttagcagacattatcctcgttggattgcaaattaccatgaacatgaa
tctcttctacaagaaaatgaagcagaaaggctcacaaaagaggaacaagaaatggcttgg
ttaaattatcaaagatcactggagtgggaggaggtacacaggactgtatttgatgaacct
gacagaaagttagttgtagatgatattccagctgagggtattccttctcaacaagccaag
ggtacttcaaggagccgcccagttatccaaaggaagtgtagcaacctcgcccacttgcta
actttgagaagccagggtaccaaatctggatccagcactgtttgtggtgagtgtgcacag
gagattagttgggagaacctcaacagagatggaagatcaaggtga

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