KEGG   Typha angustifolia (narrow-leaf cattail): 140762523
Entry
140762523         CDS       T11061                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140762523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140762523
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     140762523
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     140762523
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965 BAR_4
Other DBs
NCBI-GeneID: 140762523
NCBI-ProteinID: XP_072956491
LinkDB
Position
7:join(3127822..3127914,3128013..3128144,3130856..3130993,3132076..3132126,3132539..3132628,3132738..3132884,3133028..3133138,3134370..3134438,3134941..3135708,3137275..3137445,3138019..3138181,3138249..3138373,3138844..3139122,3139231..3139365,3139451..3139629,3140083..3140149)
AA seq 905 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNTVVGDLESQIDNFEAEVEGLSVKKGKTRPPRLTHLEASITRHKA
HIKKLELILRLLDNDELSPDQVNDAKDFLEDYVERNQEDFDEFSDVDEFYSSLPLDKVEA
LEDLVSLGPSSLVKGVGSISTSSAVIGLKNSIASPPPTALSSTASHGTTQDQVEETASQD
NNSDMAPRTPPSKSNTMGSLVSSASPSIISGTPAGPTSVTPTASGHSLVGVPTAAAVLSG
PASVLGASENIATTGSSPLANSSSSAKEDDNTTFPGRRSSPAIPEISIGRGITRGISNQA
SVSAPINLSSASENLGNGALGSVPAISELTKRNMLNVDERIGSGSLAQPLVSPLGNRILL
QQASRINDGITPGDSNNIGESAVIGARVFSPSVVSGVQWRPQTAAGFQNQNETGQFRGRP
EIAPDQREKFLQRLQQVQQQGHSNLLNVPHIPGVNQKQFPSQQQNSLLQQFSPQSSSISP
QVGLGLGVQGPGIPSVTSASQQKSTPILPQSMQHSLISSGPKDGDAGLMKIEEQQQQSFT
DDVNVEPAMTSGLKIINEDDLKTPYSNTVSASVTEGNQLPRDADLSPGQQLQSSQSFGNL
GVIGRRSVADLGAIGDNLSGTAGNSGGMHDQSYNIQMLEAAYYKLPQPKDSERVKSYIPR
HPVVTPASYPQTQAPIVSNPAFWERLSLDSLGTDTLFFAFYYQQNTYQQYLAARELKRQS
WRYHRKYNTWFQRHEEPKVTNDEYERGSYVYFDFHVNDDGSNGWCQRIKNDFTFEYNYLE
DELVV
NT seq 2718 nt   +upstreamnt  +downstreamnt
atgggggcgagccggaagctacagggcgagatagatcgcgtcctcaagaaggtacaggaa
ggcgtcgatgtcttcgacagcatctggaacaaggtttacgacacggaaaatgcgaatcag
aaggagaaatttgaagcagacttgaagaaagagatcaaaaagctgcagcggtaccgagat
cagatcaagacatggattcaatcgagtgaaataaaggataaaaaggttagtgcctcttat
gagcaggctctcatggatgctcgcaagcttatcgagcgtgagatggaacgatttaaggtc
tgtgaaaaggaaactaaaacaaaagctttctccaaagaaggcttgggccaacaaccaaag
actgatccaaaagagaaggcaaaagcagaaacaagagattggttgaacactgtggttgga
gatttagaaagtcagattgataactttgaagcggaggttgaaggtctctcagttaagaaa
ggaaagacaaggccaccaagattgacacatttggaggcatctataacgagacataaggct
catataaagaagctggagttgattttgagactgttagataatgatgaattgagtcctgat
caggtcaatgatgctaaagattttctggaagattatgttgaacgtaatcaggaggatttt
gatgaattcagtgacgttgatgagttctatagttcattacctttggataaggttgaagca
cttgaagacctggtttcacttggtccttccagtcttgtaaagggtgttggttctatttct
acttctagtgcagttataggtttgaagaactcgatagcatcacctcctccgactgctctg
tcatcaactgcctcacatggtactactcaagaccaagttgaggaaacagcttctcaggat
aacaattctgatatggcaccaagaacaccgccttccaagagcaatactatgggatctctg
gtttcatcagcttcccccagtatcatctctgggacaccagcaggtcctacatctgtcact
cctactgcttctggacattcattggttggagtgccaacagctgcagctgtgctttctggc
cctgcaagtgttctaggtgcttcagagaacatagctactacgggttcatcacctcttgct
aactcttccagttcagcgaaggaggatgataacacaaccttccctggtcgaagatcatct
cctgcaattcccgagatttccattggtagagggataactcgagggatatccaatcaagca
tctgttagtgctcctataaacttgagttcagctagtgaaaatttgggaaatggagccctt
ggttcagttcctgcaatctctgagttgacaaagagaaacatgttaaatgttgatgagaga
attggaagtggtagtcttgctcagcccttagtttcacctctaggtaacaggatactattg
caacaggcttcaagaattaatgatggaattaccccgggtgattctaataacattggtgag
agtgctgtaatcggagcaagagtcttttcaccttcagttgtttctggagttcaatggagg
ccccaaactgcagcaggtttccagaatcaaaatgaaacgggccaatttcgtggacggcct
gagattgctcctgaccaaagggagaagttcttgcaacggctgcaacaagtgcagcaacaa
ggacacagtaatcttcttaatgttcctcacatccctggtgtgaaccagaagcagtttcca
tcgcagcagcaaaactcacttctgcaacagtttagtcctcaaagctcatctatttcaccc
caagtgggccttggtcttggggttcaggggcctggtatcccttctgttacttcagcctca
caacagaagtctaccccaatactcccacagtctatgcagcattctttgatttcatctggt
ccaaaagatggagatgctgggcttatgaaaatagaagagcagcaacaacagagttttact
gatgatgtgaatgtagaacctgctatgacttctggactgaagatcattaatgaggatgat
ttgaaaacaccatactcgaacacagtttctgcctctgtgacagaaggtaatcagttgccc
agagatgctgatctttcacctgggcagcaattgcaatctagtcagtcatttggtaacctt
ggggttattggccgaagaagcgttgcagacctcggtgctattggagataaccttagtgga
acagctgggaattctggtggcatgcatgatcaatcctataatattcagatgcttgaagct
gcatattacaaacttccacaacccaaggactcagagcgtgtgaagagttatattccaagg
caccctgttgttactcctgctagctaccctcaaacgcaagccccaattgtttccaatcct
gctttctgggaacgattaagtcttgattcattaggcactgatacgctgttcttcgctttc
tactatcaacagaacacttatcagcaatatttagctgctagagagctgaagaggcagtca
tggagataccacagaaaatacaacacatggtttcaacggcatgaggagccgaaagttaca
aatgatgaatacgagaggggatcatatgtgtactttgatttccatgttaatgatgacggt
agtaatggatggtgccaaaggatcaaaaatgacttcacatttgagtacaactatcttgag
gatgagcttgtggtgtag

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