Typha angustifolia (narrow-leaf cattail): 140762927
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Entry
140762927 CDS
T11061
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140762927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140762927
03036 Chromosome and associated proteins [BR:
tang03036
]
140762927
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140762927
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
140762927
mRNA degradation factors
5'-3' decay
Decapping complex
140762927
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Gene silencing
piRNA pathway
140762927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
TFIIA
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
140762927
NCBI-ProteinID:
XP_072957015
LinkDB
All DBs
Position
7:complement(join(14744027..14744105,14744192..14744265,14744639..14744727,14746318..14746498,14746578..14746829,14747628..14747866,14748667..14748901,14749919..14749979,14750684..14750970))
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AA seq
498 aa
AA seq
DB search
MNPRGRYPPGIGDGRGGSMDGNPNYYGRSPQQQHQYVQRNPLPGQQQQQQFQQFQQQQQQ
FQQQQQQQWLRRNQMGSDSSTSKAVTSIQPNSIDSSSQDWKAQLKIPPPDTRYRTEDVTA
TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCI
PALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLNIQVMATTGGTSLKDDIMRLY
QPVHLLVGTPGRIIDLSKKGVCVLKDCAMLIMDEADKLLSPEFQPSIEQLIRFLPANRQI
LLFSATFPVTVKDFKDKYLPKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQ
INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL
FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL
GTEIKQIPPQIDQTIYCR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcgaggtaggtatccccccgggatcggcgatggccgtggggggagcatggat
ggaaaccctaattattatgggagaagccctcagcaacagcaccagtatgtgcagcggaat
ccactgccggggcagcagcagcaacagcagttccagcagttccagcagcagcaacagcag
ttccaacagcagcaacagcagcagtggctgagaaggaatcagatgggaagtgattcctcc
accagcaaggcggtaacatcaattcagcctaacagcattgattcaagttcacaagattgg
aaggcacaattaaagataccacctccagatacacgttacaggactgaggatgttactgca
actaaagggaatgaatttgaagactattttctgaagcgtgagctacttatgggtatatat
gagaagggatttgaaagaccttctcctattcaagaagagagcattcccattgcactaact
ggcagtgacattctcgcaagagcaaaaaatgggacaggaaagacagctgcattttgcatt
cctgcactggagaagattgatcaggataaaaatgccattcaagttgttatattggttcct
acaagggaattagcgctgcaaacatcacaagtttgtaaagagcttgggaaacacttgaat
atccaagttatggcgaccaccggaggaaccagcctaaaagatgatattatgcgtttgtat
caacctgtccatttgcttgttggaacacctggtcgaataattgatctttctaagaaaggt
gtttgtgtcctgaaggattgtgcaatgctcattatggacgaggcagacaagcttctatct
ccggagttccaaccttctatagagcagctgattcgtttccttcctgctaatcgacagatt
ttactgttttcagcaaccttccctgtaactgtgaaggatttcaaagacaaatatttacca
aaaccttatataattaatcttatggatgagcttacactgaaaggaattacacaatactat
gcttttgtagaagaaaggcagaaagttcattgcctcaacactcttttctcaaagcttcaa
atcaaccagtcgatcatattttgcaactctgtcaaccgggtagaactattggcaaagaaa
atcaccgagcttggttattcttgcttctatattcatgctaaaatgttgcaagatcatcgg
aatagagttttccatgattttcgtaatggtgcatgcaggaaccttgtttgcacagatctc
tttacgagggggatagatatccaggctgttaatgttgttatcaattttgattttccgaag
aacgctgaaacgtatctccacagggttggtcgttctgggagatttggccaccttggttta
gcagtgaatttgatcacatatgaggaccgcttcaacttgtatagaatcgagcaagaactt
gggactgaaataaaacagatacctccacagatagaccagactatatactgcagatga
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