Typha angustifolia (narrow-leaf cattail): 140763484
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Entry
140763484 CDS
T11061
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140763484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tang03400
]
140763484
DNA repair and recombination proteins [BR:
tang03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
140763484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
140763484
NCBI-ProteinID:
XP_072957792
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All DBs
Position
7:complement(join(17457199..17459151,17459256..17459414,17459966..17461528))
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AA seq
1224 aa
AA seq
DB search
MDSVPRRIRVRETISDRVEPDARQRDRGGGEARVLPGRSGTAFRRPELVVIVDDEEEEDD
RRGRRDGGKGGSSKGDSASVAMRTRSRSLEVLKAEELSRSLSSDQKGAVFHSGYGGGDSE
GTVEGSIKSKSGSNEGNSVSLGTSDSVAREFKAQESNKLSPERETVNVKDELMEEEQLED
SKNWIDDGMEESPESEDADDSEGEGEGKEEEEIDGGDSQRDLQKVINLMASSSIAQRTRS
RVGIQKRFSYTPFFEELSSDTVDKEEEHEEEEEDNLEINNSDTTIRDDQEGFVNKGESSR
IFRKRKFSGIDVLVPLGNEKANGEGPASSGSTGVAKRTRSCFSSEPEKKKQKLGTVSNPY
CLDVDESDSVLEFRLSSSGEEDEKSNKRSQVEKSGDINVNVMDIDEGKGGLRHERVQPRK
DKKIKRGKMPKGQDLAKLLVDTIWNDKEKLSEDSAPIENSSSPLDENQCCDEDFPPLQFS
FGDEDPEPVDRSDYEKATDELWADFEFALESMNIGTYNIDEGQEKQSNEHQVGSDPRALC
SQGKHEFILDEQIGIKCKFCSFVSLEIRHVLPSLSRNIGQKSALKHITNLESPLLYDDLG
AAENNDKLGSQCHLEGTVWDLIPGMIETMYPHQQEAFEFMWKNLAGGINLNELKNGTRPD
VVGGCVISHAPGTGKTRLAIVFIQTYMKIFPECRPVIIAPSGMLLTWEEEFKKWNINLPF
HMLNSRDYSGREDNAICKLVSREPQTEKLVRLVKLYSWEKGGGILGISYGLFKGLTSDRC
KSPTDMKLKSILLEKPGLLVLDEGHTPRNERSLIWKALGKVKTEQRVILSGTPFQNNFLE
LYNILCLVRPKFAEKILINVPVVSRRKTKPNSEKEQTIYPEKDEGKGFWTSLTSQVTDHN
VAEVRSVLKPFVHIHNGNILQALPGLRECVIILNPLPLQKDIIEKMEKSIGARGNFETEY
QIAMASVHPYLVTSINMTEEEAALINKDLLEDLRLDPFEGVKTRFVIEVVRLCEALKEKV
LIFSQYIQPLTLIKEHLIMVFNWSEGKEVLQMDGKILPRYRQSSIDVFNDLKSEAKVLLA
STKACCEGISLTGASRVVLLDVVWNPAVGRQAISRAYRIGQKKIVYTYNLITSGTKEGDK
YDRQSRKDHLSKLVFSPENELNNVKNSLSQAAEEHSLKLISEDKILEEMTAHDQLKDMFV
KIYYPPTESNMFYTYRRIASEFGG
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggattctgttcctcgcagaatacgagttcgcgaaactataagcgaccgagtcgaaccg
gatgcacggcagcgcgaccgtggcggtggcgaggctagggttttacctgggagaagcggc
acggcgtttcggcgcccggaactcgtcgtcattgtggatgacgaggaagaagaggacgat
cgaagaggacgccgggatggcggaaaaggtggctcttcgaaaggagacagtgcgtcagtg
gcgatgagaactcggtcgagatcgctagaggtgttgaaagcagaggagttgtcgagatct
ttgtcgtcggaccagaaaggtgccgtctttcattcaggttacggcggcggcgatagcgag
ggcaccgttgagggatcgataaagtcgaaatcagggtctaacgaagggaactcggtttct
ttgggcacttcggattcagtagcaagagagttcaaagctcaagaaagcaacaaactttcc
ccagaaagggagacagttaatgttaaagatgaacttatggaggaggagcaattggaagat
tcaaagaattggattgatgatggaatggaggagtctcctgaatctgaggatgctgatgat
tctgagggagaaggagagggaaaggaagaagaggaaatcgacggcggtgatagccaaagg
gatcttcagaaagtcattaatttgatggcgtcttcttccatcgcacagagaactcgctcg
cgtgtgggtatacagaaaaggttttcatacactcctttctttgaagaactgtccagtgat
actgtggacaaagaggaggagcacgaagaggaagaggaggacaatcttgaaattaataac
agtgatacgacaataagagacgatcaggaaggatttgtaaacaagggtgagagctcccgg
attttccgaaagaggaaattttctggaatcgacgttcttgtgccactcggcaatgagaaa
gccaatggcgaaggtcctgccagtagtgggagtactggggttgcaaaacgtacgagatca
tgtttcagttcagagccagagaagaagaagcaaaagcttgggacagtaagcaacccatat
tgtttagatgtggatgagtcagactcagttcttgagttcagattgtcttcgtctggtgag
gaggatgagaagagcaacaaaaggagtcaggtcgagaaaagtggcgacatcaatgtgaat
gtgatggacattgatgagggaaagggaggattgcggcatgagcgagtgcagccacggaaa
gacaagaagataaaacgtggtaagatgccaaagggacaagaccttgccaaacttcttgtt
gatacgatctggaatgacaaagagaagctttcagaagattcagctcctattgaaaattca
tcttccccactggatgagaaccagtgttgcgacgaggattttcctccattacaattctca
ttcggggatgaagatcctgagccagtcgacagatctgattatgagaaagctacggatgaa
ttgtgggctgattttgaatttgctctggagtctatgaatattggtacatataatattgat
gagggtcaagaaaagcagagcaacgaacaccaggttggttctgatccacgggctctttgt
tctcaagggaagcatgagttcatcctagatgagcagattggaattaagtgcaaattttgc
tcctttgtgagcttggaaatcagacatgttttgccatccttgtcaagaaacatcgggcag
aagtcagcactgaaacacatcactaatttggagagccccttgctatatgatgatttagga
gcagctgaaaacaacgacaagctaggttcacaatgtcatctagagggaacagtgtgggat
ctcattcctgggatgattgagaccatgtatccacatcagcaggaagcatttgagtttatg
tggaaaaatttagcaggtggaattaacctcaatgagttgaagaatgggactagacctgat
gttgttggtggctgtgtaatttcgcatgctccagggacaggaaagacccggctagcaatt
gtttttatccaaacatacatgaagattttccccgaatgccggcctgtaattattgctcct
agcggaatgcttcttacgtgggaagaagaattcaaaaagtggaacatcaacctaccattt
catatgctaaattctagggactattctggaagggaggacaatgccatctgtaagttggta
agcagagaacctcaaactgagaagttggtacgcctggtgaaactgtattcatgggagaaa
ggtggtggtatccttggaataagctatggcctttttaagggacttacatcagacagatgc
aagagccccacagacatgaaattaaaaagtatccttcttgaaaagccaggcttactcgtt
cttgacgaggggcatacacctagaaatgaacgtagtctcatttggaaggcactgggaaaa
gtgaaaactgaacagcgtgttattctttcaggaactcctttccagaataattttctggag
ctgtacaatattttatgtctggttagacctaagtttgctgaaaagatcttaatcaatgtg
ccagtagtaagccgacgaaaaacgaagcctaactcagagaaggagcagaccatatatcct
gaaaaggatgaagggaaaggtttttggacttctctaactagtcaagttactgatcataat
gtggcagaagtgagatctgtattgaaaccttttgtgcatattcataatggtaacatcctc
caggcactcccaggtctaagagaatgtgtgattattttgaatcccctccctctgcaaaaa
gacatcattgagaagatggagaagagtattggggctcgcggaaattttgagactgaatat
cagatcgccatggcctccgttcatccgtaccttgtgacctctattaacatgactgaagag
gaggctgctctcataaacaaggatttactagaggatctgagattggacccctttgaagga
gtaaaaacgagatttgtgattgaagttgttcgcctatgtgaagcattgaaagagaaggtt
ttaatttttagtcagtatatccagccactaaccctgataaaagaacacctcattatggta
tttaattggagtgaagggaaggaggtgctccaaatggatggaaagattcttccacgatat
cggcagtcctcaattgatgtcttcaatgatttgaaaagtgaggcaaaggtgttgcttgca
tctacaaaggcttgctgtgaagggattagtcttactggggcttcaagggttgtacttcta
gatgttgtttggaatcctgcagtaggaagacaagctatcagccgagcatatagaattggc
cagaaaaaaattgtgtacacctacaatttaatcacatccggaacaaaggaaggagacaag
tatgacagacaatccagaaaagatcacctgtccaaattggttttttctccagaaaacgaa
cttaataatgtgaagaatagtttatcacaagctgcagaggagcactctcttaagttaata
tctgaagataagattttggaagagatgactgcacatgaccagctcaaagacatgtttgtg
aagatctattacccgccaacagaatcaaacatgttctatacatacaggcgaattgcttct
gaatttggtggatag
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