KEGG   Typha angustifolia (narrow-leaf cattail): 140764195
Entry
140764195         CDS       T11061                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 homolog
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140764195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tang03041]
    140764195
   03400 DNA repair and recombination proteins [BR:tang03400]
    140764195
Spliceosome [BR:tang03041]
 Complex B
  Other components
   Prp19 complex
    140764195
 Complex C
   Prp19-CDC5 complex
    140764195
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    140764195
SSDB
Motif
Pfam: BCAS2 ORC3_ins WavE THOC7
Other DBs
NCBI-GeneID: 140764195
NCBI-ProteinID: XP_072958725
LinkDB
Position
8:complement(join(15611323..15611380,15611482..15611615,15611689..15611758,15614249..15614332,15615619..15615794,15616360..15616599))
AA seq 253 aa
MAATREVLMLEAPPDPTREGWSAGPKADVVDALPYVDDDYGDPRVKAEVDRLVEEEMRRS
SKKPADFLRELPPMPPVSFEDHPMLAREYERVRAGKPPVTLELSRYGLEPPAANKRNDVT
AWRQAVRNAQSLLQHQIIRIENLELTLKHGVDVWKHQNKQMESFLSRMQNLALENNEKIE
AVNRERKFHQQNTGMQLNALTAEWRELCEKNIAIQAACSDIQNHIDMLKLEANENGIDMD
TNMENRSSLPAEF
NT seq 762 nt   +upstreamnt  +downstreamnt
atggcggcgacgagagaggttttgatgctggaagcgccgccggatccaacccgcgagggg
tggtcggccggaccaaaggctgacgtcgttgatgcactcccctacgttgacgacgactac
ggcgacccgagagtgaaggccgaagtcgaccgcctcgtcgaggaggagatgcggcggagc
tccaagaagcccgccgacttcctcagggaactgcctcccatgccccccgtctccttcgag
gatcatcctatgcttgctagagagtatgagcgtgtgagagcgggaaagcctcctgttact
ttagagttgtcccgttatggattagaacctcctgcagcaaacaagcgtaatgatgttact
gcttggaggcaggctgtacggaatgcccagagcctgctacagcatcaaattataaggatt
gagaatctggaactgacactgaagcatggtgttgatgtctggaaacatcagaacaaacaa
atggagtcattcttgtctagaatgcagaacttggctttggaaaacaatgaaaagatagaa
gctgtaaaccgtgaaaggaagttccatcagcaaaatacaggtatgcaactcaatgcactt
acagcagaatggagggagttatgtgagaagaatatagcaatccaagctgcatgttcagat
atccagaatcatatagatatgctcaagcttgaagcaaatgagaatggtattgatatggac
accaatatggaaaatcggtcgtcacttccggcagagttttaa

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