KEGG   Typha angustifolia (narrow-leaf cattail): 140764288
Entry
140764288         CDS       T11061                                 
Name
(RefSeq) zinc finger CCCH domain-containing protein 24
  KO
K15332  tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:tang00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tang03016]
    140764288
Transfer RNA biogenesis [BR:tang03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    140764288
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 zf-CCCH RRM_1 Methyltransf_15 Methyltransf_4 MTS Ubie_methyltran Methyltransf_11 PCMT PrmA AviRa
Other DBs
NCBI-GeneID: 140764288
NCBI-ProteinID: XP_072958867
LinkDB
Position
8:join(4101315..4101818,4102791..4102883,4102971..4103303,4103479..4103551,4104397..4104529,4104611..4104764,4104924..4105007,4105355..4105477,4107693..4107863,4107941..4108075,4108694..4108789,4109380..4109892,4110642..4110685,4110874..4111117)
AA seq 899 aa
MEMDATPTVEEIGPSNPQFTDSICSEVNGDRVALVASEKRKREEEEEESNGVGEEAKEDS
KTKAPLWKTSLCSYFRRNLGGDGCSHGDACRYAHGEAELRPRPDNTWDPTSNRAKKLVKS
DGAGRDGKVEEALAAPEVTVDEESLDKCLIGLPRKWASDNLKSFLDGQGIFYKSAKKKKG
MPVGFVTFENTEHLKSAIEILNQKSTGGKEIKVVDAIRKSHEKKHKMENSSDQSRQRHGA
NQSGNEDSNPDMESNLVKLGTNTEEETSLGEGLASKTKAVRDVVTPLAHMPYNEQLDYKK
NGLLQILKRLTRNARKACPDSVPLPEWVIKSREIGGLPCKLEGILQSPIINGYRNKCEFS
VGYSLQGKRTVGFMLGNFREGVTAVEEPVNCPNVSKISCKYAMIFQDFLQSSVLPVWSRI
DNIGFWRQLMVREGRDPVQVAVAQNLEPQVLEVMLVIQVCSSGVDEELMKTEFDNLSRAF
AQGAAACSHPLPLTTIIVQDHKGISNAAPADCPLIPLLVPQVDGSACSEKICDNGGRIHD
YISNLRFSISPTAFFQVNSLAAERLYNLAGDWADLNHDTLLFDICCGTGTIGLTLANRVG
MVVGIEMNESAVIDAQRNAVLNGVNNCRFVCGKAEDVMGSLLKEYLGVPQQAALDCNGTS
ATNSTENYDSATNNADNGGIFQHDACTSRELVCATAEEMLDSSGDRSNEKFEASCEESSE
NNGADNCYNGSSEHELSSCDAKSSVILKSCTTGPKDTIPENQNLKDVSRDNCLPEEKGAD
IAPLCRFKNVVAIVDPPRVGLHPIVIKALRTHPRIRRLVYISCNPESLVANAIELCTPTA
DVAEKRKGNRGWRNMSSAGLARQRTKSMPNSEPFRPVRAMAVDLFPHTPHCELVMLLER
NT seq 2700 nt   +upstreamnt  +downstreamnt
atggagatggacgcaactcccaccgtcgaagagatcggtccgtccaatccccagttcact
gactccatatgctccgaagttaacggagatagagtagcattagttgcctcggagaagcgc
aagagagaggaggaagaggaagagagcaatggagttggggaggaagccaaagaagactcg
aagaccaaggctccactgtggaagacgagcctgtgctcgtacttccgtaggaatctcggg
ggagatggctgcagccatggcgacgcgtgccgctatgcccatggggaggccgagctccgc
cctcgacctgacaacacgtgggatcccacctccaaccgcgccaagaagctagtgaagtct
gatggggccggcagagacggaaaggtggaggaagctttggcggcgccggaggtgacggta
gacgaggagtcgctcgacaaatgcctgattggcctcccgaggaagtgggcgtccgacaat
ttaaagagcttccttgacggtcagggaattttctacaagtctgctaaaaagaaaaaggga
atgccagtaggttttgtgacctttgagaatactgaacatcttaaaagtgctattgagatt
ttgaatcaaaagtctactggtggaaaggaaataaaggttgtagatgccatccgtaaatcc
catgagaagaaacataagatggaaaattcttctgatcaaagtagacaacggcacggggca
aaccaatcaggcaatgaagattccaatcctgacatggaatcaaatttggtcaagctgggt
actaatactgaagaagaaacttctctaggtgaaggcttagcttcaaagacaaaagctgtt
cgtgatgtggtcactccgcttgctcatatgccctacaatgagcagttggattacaagaaa
aatgggctgttgcaaatactcaagcgacttactcggaatgctcggaaagcttgtccagat
tctgtaccacttccagagtgggtgattaagtcgagagaaataggtggtcttccgtgcaag
cttgaaggtatattacagtcaccaataataaatggataccgtaacaaatgtgagttttca
gtgggctattcgttgcagggtaaacgaactgtgggatttatgcttggaaattttagggag
ggtgtgacagcagttgaggaacctgtcaactgcccaaatgtatcgaaaatttcctgtaag
tatgctatgatctttcaagattttttacagtcatcagtcttgcctgtgtggagcagaatt
gacaacatcggattttggcgccaattgatggtgcgagaggggagggatccagttcaagtt
gctgttgctcaaaatctggaacctcaagtcttggaagtcatgcttgtcattcaggtttgc
tcttctggcgttgatgaagaactgatgaaaactgaatttgacaatttgtctagggctttt
gctcaaggagcagctgcatgctcacatcctctacctctgacaacaataatagtgcaggat
cacaaaggaatatcaaatgctgcaccagctgattgtccattgattcccctgctagtacca
caagtagatggaagtgcttgttcagaaaaaatttgtgacaatggtggcaggattcatgat
tacataagcaatctccgcttctccatatcaccgacagccttttttcaagttaattctctt
gctgccgagaggttatacaaccttgcaggtgattgggctgatctaaatcatgatacatta
ctctttgacatatgttgtgggacaggaacaattggcttgactttagcaaaccgtgttgga
atggttgttggtattgagatgaatgagtcagcagtcatagatgcacagagaaatgcagtg
cttaatggtgtgaataattgtagatttgtctgtggaaaggcagaggatgtaatggggtct
ctgcttaaagagtatcttggtgtcccacagcaagctgccctagattgtaatggtacctca
gcaacgaatagcactgaaaattatgacagtgcaacaaataatgctgataatggtggaatt
ttccagcatgatgcatgtacatccagagaactcgtatgtgcaactgctgaggagatgcta
gacagttcaggtgataggagcaacgaaaaatttgaggccagctgtgaagagagctctgaa
aataatggagcagataactgttacaacggatcctctgaacatgagctttcttcctgtgat
gccaaatcatctgttatcctgaaaagttgcactacagggcctaaagacacaattccagag
aatcagaatttgaaagatgtaagtcgggataactgccttcctgaagaaaagggagctgat
atagctcctctgtgcagatttaagaatgtcgtggctattgttgaccctccacgggtcggt
cttcaccccatagtgattaaagctctcaggactcatccacgtataaggcgacttgtgtac
atttcctgtaatcctgaaagtttggtggctaatgcgattgaactttgcactccaactgct
gatgtagcggaaaagaggaaaggcaacagaggatggcgaaacatgagcagtgctggtctg
gccagacagcggacaaagtcgatgccgaactctgagcctttccggcctgtcagggccatg
gcggtcgatttgtttcctcatactccacactgtgagttggtgatgcttcttgagaggtag

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