Typha angustifolia (narrow-leaf cattail): 140764369
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Entry
140764369 CDS
T11061
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tang04131
]
140764369
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tang04147
]
140764369
Membrane trafficking [BR:
tang04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
140764369
Exosome [BR:
tang04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
140764369
Exosomal proteins of bladder cancer cells
140764369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_ACSF4
ENTH
Beta-prop_At4g14310
Fis1_TPR_C
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
140764369
NCBI-ProteinID:
XP_072959007
LinkDB
All DBs
Position
8:complement(join(3353193..3356140,3356512..3357006,3357362..3357569))
Genome browser
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHDEYPWIVSASDDQTIRIW
NWQSRNCIAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPSLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGLQTFRRDHDRFWILATHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDNLYYVKDRFLRFYEYSSQKDNQVVPVRRPG
SISLNQGPRTLSYSPTENAILICSDVDGGSYELYIVPKEAVGRADYMQDAKKGAGSSAVF
VARNRFAVLDKSNNQALVKNLKNEIVKKSVLPIATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIILGELQAPSVKYVVWSSDMESVALLSKHTIVIANKKLVHRCTLHETIRVKSGAWDDN
GVFVYTTLNHIKYCLPNGDSGIIRTLDVPIYVTKVSRNNIYCLDREGKNKVISVDASEYI
FKLALLRKQYDNVMSMIRNSQLCGQAVISYLQQKGYPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGIEALRQGNTSIVEYAYQKTKNFERLSFLYLVTGNMDKLSK
MLRIAEIKNDVMGQFHNAMYLGDIQERVKILEKAGQLPLAYVTAASHGLTEVADRLAAEL
GDNTPSLPEGKVHSLLMPPAPLMCSGDWPLLRVMRGIFEGGLDNLGKAGNEEEEAIDGEW
GDEELDMVDAEGIMQNGDLVAEVEGEENEDNDEEGGWDLEDLELPPDVDTPKAAGNARSA
VFVAPTPGMPVSQIWIQKSSLAGEHVAAGNFDTAMRLLSRQLGIKNFTPLKPFFMDLHMG
SHTYLQAFPTGPVISIAAEKGWSESASPNVRGPPALVFKLSQMDEKLKAAYRATTEGKFP
EALRQFLNIMYTIPLIVVDSRREVDEVKELIEIVREYVLGLKIEVKRKETKDNIIRQQEL
AAYFTNCKLQRIHMRLVLTSAMTICFKGGNYSTAANFARMLLENSPNEAHGKKARQVLQA
CSDKQDANQLNYDYRNPFVVCGATFVPIYRGQKDVSCPYCGSHFVPAIEGQICAVCELAV
VGADASGLLCSPTQSR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaatttgagacgaagagcaatcgggttaaggggctcagcttccatagcaag
cggccatggatcctcgctagtctccacagcggggtgatccagctatgggattatcggatg
ggcacgctcattgaccggtttgatgagcacgatggcccagttcgcggcgtccacttccat
aaatcacaacccctcttcgtctctggaggagatgactacaagatcaaggtctggaattat
aagacccacagatgcctgtttacccttcttggacaccttgattatattcgtactgtacaa
tttcacgatgagtacccgtggatcgtcagtgccagtgatgatcaaacaattaggatctgg
aactggcagtctcgtaactgcattgcagtgttgactgggcacaaccactatgtcatgtgt
gcatcctttcatcctaaggaggacctggttgtatcggcttctctggatcagacagtccgc
gtctgggatattggagcgctgaggaagaagacagtttctccagctgatgatattttgcgt
ctaacccagatgaacaccgatttgtttgggggagttgatgctgtcgtcaagtatgtcttg
gaaggtcatgatcgtggagtcaactgggcatcttttcatcctagcttgcctcttattgtg
tctggagctgatgatcggcaagtgaagctgtggcgaatgaatgatacaaaggcttgggaa
gtagacacattgagggggcacatgaataatgtatcttgtgtaatgttccatgcaaagcag
gatattattgtttcgaactcagaggacaaaagcattcgcatatgggatgctaccaaacgc
actggtctgcagacatttcgccgtgatcatgatcgtttttggattcttgctacacatcca
gaaatgaaccttcttgcagctggtcatgatagtggcatgattgtcttcaaattggagagg
gaacgccctgctttttctgtgagtggtgataatctatactatgtaaaagaccggtttttg
cggttctatgaatattcatctcaaaaggataaccaagtggttccagtaagaaggcctgga
tctattagcttgaatcagggacctagaacattgtcttatagccccacagagaatgctatc
ttgatctgttctgatgtcgatgggggatcatatgagctatacatcgtgcccaaggaagct
gttggaagagctgattatatgcaggacgcaaagaaaggagctgggagttcagctgttttt
gtagctcgtaacaggtttgccgttcttgacaaaagcaacaatcaggcattggtgaagaac
cttaagaatgaaattgtgaagaaaagtgtccttcccattgctactgatgcaatattttat
gctgggacaggcaacttgttgtgcagggcagaggatagggtagtcatctttgatcttcag
cagagaattattctcggtgaacttcaggctccatctgttaagtatgttgtttggtcgagc
gacatggagtctgttgcattgcttagcaaacacactattgttattgctaataagaaactt
gtgcatcgttgcacattgcatgagacaatccgtgtgaaaagtggtgcttgggatgacaat
ggtgtctttgtttacacaactttgaaccatattaaatattgccttcctaatggggacagt
ggaatcataagaactcttgatgtccctatttacgtaaccaaggtatctaggaacaatata
tattgcttggatcgtgaggggaagaacaaggtcatctctgttgatgcttcagagtacatc
ttcaagcttgcccttctgaggaaacaatacgacaatgtgatgagtatgatcaggaactca
cagctatgtgggcaggctgtgatctcatatctgcaacagaaaggatatcctgaagtagca
ctgcattttgtcaaagatgagaggactcggtttaatttggctcttgagagtggtaacatc
cagattgctgttgcttctgcaaaagagatagatgagaaagaccactggtacaggttgggc
attgaggctctccggcagggaaacactagtattgtggaatatgcataccagaagacaaag
aacttcgagcgactttcttttctgtatcttgtgactgggaacatggataagctgtccaaa
atgctcaggatagctgaaattaagaatgacgtgatgggtcagttccacaatgccatgtat
ttaggtgacattcaggaacgagtcaagatcttggaaaaagctggccagttacctcttgca
tatgtcactgctgccagtcatggactaactgaagtggccgataggcttgctgctgaattg
ggagataataccccctctctacctgagggaaaagtccattctcttctgatgcctcctgca
cctctcatgtgtagtggggactggcctttattgagggtcatgcgtggtatttttgaaggt
ggattggataaccttggaaaggcaggaaatgaagaagaagaggctattgacggtgaatgg
ggcgatgaggaactggatatggttgatgcagagggcataatgcagaatggtgatttagta
gcagaagttgagggtgaagaaaatgaagataatgatgaggaaggtggatgggatcttgaa
gatttggagttaccacctgacgttgatacaccaaaggctgcaggtaatgctcgatctgct
gtgtttgttgcaccaacaccaggcatgcctgtcagccaaatctggatccaaaagtcctcc
cttgccggggagcatgtggcagctggaaactttgacactgccatgcgcctacttagccgg
cagttgggtattaagaacttcacaccactaaaaccattcttcatggatcttcacatgggc
agccacacatatctgcaagcttttcctacgggcccagtgatatctatagctgccgagaag
gggtggagcgagtctgccagccctaatgtgaggggcccaccagcacttgtgttcaagttg
tcgcagatggatgagaagctcaaggcagcataccgagccactaccgaaggaaaatttcca
gaggctttgcgacagtttcttaatatcatgtacactattccactaattgtagtggactcg
agaagggaagttgatgaagtgaaggagttgatcgagatagtaagagaatatgtgcttgga
ttgaagattgaagtcaaaagaaaggaaactaaagataatatcattcggcagcaagagttg
gcagcatatttcactaactgtaagcttcagaggattcatatgagactcgtgctcacaagc
gctatgactatctgcttcaagggagggaactactctactgcagctaattttgcaaggatg
cttctggagaacagcccaaatgaggcccacggaaagaaggccaggcaggtgctacaggct
tgcagcgataaacaagatgctaaccagttgaattacgattacagaaatccatttgttgtt
tgtggagcaacctttgttccgatctaccgtggtcagaaagatgtatcctgcccttattgt
gggtctcattttgtaccagccattgaaggacaaatttgtgctgtttgtgagcttgcagtg
gtgggagcagatgcgtcaggtttgctttgttctcctacacaatcaagataa
DBGET
integrated database retrieval system
