KEGG   Typha angustifolia (narrow-leaf cattail): 140764543
Entry
140764543         CDS       T11061                                 
Name
(RefSeq) DNA repair protein RAD50 isoform X1
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03440  Homologous recombination
tang03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    140764543
   03450 Non-homologous end-joining
    140764543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tang03032]
    140764543
   03400 DNA repair and recombination proteins [BR:tang03400]
    140764543
DNA replication proteins [BR:tang03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    140764543
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     140764543
    BRCA1-C complex
     140764543
   NHEJ (non-homologous end-joining)
    MRX complex
     140764543
SSDB
Motif
Pfam: AAA_23 SMC_N AAA_21 AAA_15 SbcC_Walker_B Rad50_zn_hook AAA_29 ABC_tran AAA_16 AAA_22
Other DBs
NCBI-GeneID: 140764543
NCBI-ProteinID: XP_072959283
LinkDB
Position
1:complement(join(9599710..9599749,9599845..9599973,9600075..9600208,9600384..9600446,9600516..9600666,9601137..9601189,9601276..9601401,9603314..9603638,9603731..9603900,9605387..9605588,9607502..9607710,9607887..9608096,9608215..9608344,9608436..9608550,9609086..9609213,9611481..9611573,9611690..9611901,9611995..9612102,9612187..9612291,9612881..9613051,9613126..9613304,9613395..9613623,9615090..9615204,9616938..9617113,9617206..9617373,9617482..9617568,9617641..9617763))
AA seq 1316 aa
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPVQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRDNIAQDQAKSELLKT
QMKELDMNIQGVESKIMNTEATLKELRKLQDQISTNTTARSTLFKLQQTQYAALAEENED
TDEELKEWQMKFQERIALLETKISKLEREVHDEETKSSLLSQIINDSTREIGKLQAEADA
HISLKHERDSTIRRIFTKYNLGSFPDAPFSNELAFNLTNRIKTRLLDLEKDLQDKKKSNE
MELQFLWERYVAINARCSEMEGQRQAKIESKLGNLKRMKEKEKEHDLAEQELSNLNLSHI
DERERNLQIEVERKTLVLGEKDYESIINQKRTEIFSMEQKIKALYREKDILASDSEDRVK
LDLKKEELESCKRKQKKIMDEHKDRIRGVLKGRLPSDKDLKKDITHTFGSLKKEFDDLNS
KTLEAEKEVKLVQMKIQDAKSHLSKLQKDMDAKRRFLDSKLQSLIQISYDIDSFPEVLLE
AMEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERPFSPDEEDEFVKKQRVKSAS
SAEHMKVLAVECSSADTHFQQLDKVRMIYEDYMKLGKETIPLAEKNLNELMEDLNQRTQE
FDDLVGVLAHVKAEKDSVEALVQPAEIVDRLLQEMQNLRPQVEELEYKLDSRGQGVKSVE
EIQLQLNALQSKRDALSSEVENLREEQRFLSDDLSNIQMRWHALREEKLKASSILHKVKK
AEEDLVLLGEENTQVDLDEKHLEEALGPLLKEKDKLLQEHTDSKLKLEGEYEDLAERKRS
FQQEIETLTTVNTRIKEYLDSKKVEKLNDLQEKHSVSLSQLQKCENRKQEVLGDLNKSKE
LLRNQDQLKRNIDDNLNYRKTKAEVDELTHEIESLEEKVLSIGSISALETDLKRHLQEKE
RLLSELNRCHGTLSVYQSNISKYKLDLKQSQYKDIDKRYSNQLIQLKTTEMANKDLDRYY
NALDKALMRFHSMKMEEINKIIKELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDEKFAQMIGQRQHAEKYYRVTKDERQHSIIEAQEIFD
NT seq 3951 nt   +upstreamnt  +downstreamnt
atgagcaccgtggacaagatgctcatcaagggcattcgaagcttcgatcccgagaacaag
cacgtcatcaccttcttcaagcccctcaccctcatcgttggtcccaatggcgccggcaaa
accaccattatcgaatgcttgaagctttcctgcaccggtgagctcccacccaactcccgt
tccggccacagcttcatccatgaccctaaggttgcgggagagaccgagaccaagggccaa
atcaagctccggttcaagacggccgccgggaaggatgtggtctgcattcgatccttccag
ctcacgcagaaggcgtccaagatggagtttaaggccattgagagtgttttgcagaccatt
aatccccacactggagagaaggtctgccttagctacagatgtgcagacatggatagggag
atccctgctttgatgggcgtctcgaaagctatattagagaatgtgatatttgttcaccag
gacgagtccaattggccggtgcaggatccttcaacgctgaaaaagaagttcgatgacatc
ttttcggctactcgctacaccaaggctttagaagtcataaagaaacttcacaaggatcaa
gcacaggagataaaaacctacaagctgaagttggagaaccttcaaactctaaaggatgca
gcctataagcttcgtgataatattgctcaagatcaagcaaaatctgaattgttgaagact
caaatgaaagaactggacatgaacattcaaggtgtggagagtaagataatgaatacagaa
gcaactctgaaggaactgaggaagcttcaggatcaaatctcaaccaacactactgcaaga
agcacattgtttaagcttcaacagacacaatatgctgcccttgctgaggaaaatgaagat
actgatgaggaattgaaggaatggcagatgaaatttcaagaaaggattgcactacttgag
actaaaataagtaagctagaaagggaggtgcatgatgaagagaccaaaagttccttgttg
tcacagatcatcaatgattcaactcgagagattggaaagcttcaggctgaagctgatgct
catatttctttgaagcatgaacgtgattcaaccatccgaaggatatttacaaaatataat
cttggatcctttcctgatgctcctttcagcaatgagctggctttcaacctaacaaataga
ataaagacaagattattggatcttgagaaggatctacaggataagaagaaatctaatgag
atggaacttcagtttctgtgggagcgttatgttgcaataaatgctcgttgctcggaaatg
gaaggtcagaggcaagctaagattgagtctaagttaggtaatttgaagcgcatgaaagag
aaggagaaagaacatgatcttgcagagcaggaactttcaaaccttaatctatctcatatt
gatgaacgggagcgaaatctgcaaattgaggttgaaaggaagacacttgtccttggagaa
aaggattatgagtcgatcataaaccaaaaacggacagaaatatttagcatggaacaaaag
atcaaagctctttatcgtgagaaggacattttggctagtgattctgaggatagagtcaaa
ttagatctcaagaaagaagagttggaaagctgcaagaggaagcagaaaaagataatggat
gaacataaagacagaattagaggtgtccttaaagggaggcttccttctgacaaggatcta
aagaaggatatcacccatacctttgggtcgctaaagaaggagtttgatgacttgaactca
aaaactcttgaagcagagaaagaggtaaagttggttcagatgaaaattcaagatgctaaa
agccacctgtcaaagcttcaaaaagatatggatgcaaagagaagattcctcgactcaaaa
ctccaatctctaatccagatttcttatgacatcgattcctttcctgaagtactattagag
gctatggagaaaagggatgtacagaaaagcaagtacaacattgctgatggtatgagacag
atgtttgatccttttgaaagagttgcacgtgcacatcatatatgtccatgctgtgagcgc
cctttctcccctgatgaagaggatgaatttgtcaagaagcaaagagtgaaaagtgcaagt
tcggcggaacatatgaaagtattagctgtagagtgttcaagtgctgatacacatttccag
caattggataaggtccgcatgatttatgaggactacatgaaacttggaaaagaaaccata
cctttagcagagaagaatttgaatgaactgatggaggatctcaatcagaggacccaggaa
tttgatgatctggtaggggttctggctcatgtcaaggcagagaaggacagtgtggaagcc
ttggtgcagccggcagaaattgttgataggcttttgcaggaaatgcagaatttgagacca
caggttgaagagttggagtataaacttgattctcgaggacaaggtgtcaaatctgtagag
gaaatacaattgcagttgaatgctttacagagcaaaagggatgcattgagcagcgaggta
gaaaatctcagggaagagcagagattcctcagtgatgatctatcaaacatacagatgcgt
tggcatgctcttagggaggagaagctaaaagcatctagcatattgcataaggtcaagaaa
gcagaggaggacttggttcttcttggtgaggaaaatacacaagtggatcttgatgagaag
catttagaagaagctcttggcccattattaaaggaaaaggacaagttgctgcaggagcac
acagattcgaagttgaaacttgaaggtgaatatgaagatctggcagaaagaaagaggagc
tttcaacaagaaatagaaacacttacaacagttaatacaaggatcaaggagtatcttgat
tcaaagaaagtcgaaaagctcaatgacttgcaagaaaagcactctgtctcactatctcag
ctacagaaatgtgagaacagaaaacaggaagtcttaggagacttaaacaagagcaaggag
ctattacggaatcaagatcagttgaaaagaaatattgatgataatttgaattatagaaaa
acgaaggctgaagtagatgagcttacacatgaaatagaatcactagaagagaaggttcta
tctattggcagcatttctgcgttggaaactgatcttaagagacatttacaagaaaaagag
aggcttctctcagagttgaataggtgtcatggaacgctctcagtttatcaaagtaatata
tcaaagtacaagcttgaccttaagcagtctcaatacaaggacattgacaagagatactcc
aatcagcttatccaacttaagacaaccgaaatggcaaataaggacttggatcgctattac
aatgctcttgataaggccctaatgcggttccattcaatgaaaatggaggagataaacaag
ataatcaaggaattatggcagcagacatacagaggacaggatattgactacataagtatt
cattcagattctgaaggcgctgggactcgatcatacagctaccgagtccttatgcaaact
ggtgatgctgagctggaaatgcgaggaagatgtagtgctggtcagaaggttcttgcttca
cttataataagactggcactagcagaaacattttgtcttaattgtgggattctagcacta
gatgaaccaacgactaatctcgatgggcccaatgcagagagcctagctgctgctctgtta
agaattatggaagacagaaagggtcaggagaactttcagctgatagtaattactcatgat
gagaaatttgctcagatgattggccaacgccagcatgcagaaaagtattatcgtgtcaca
aaggatgaacgtcaacacagcataattgaagcacaagagatatttgattga

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