Typha angustifolia (narrow-leaf cattail): 140764660
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Entry
140764660 CDS
T11061
Name
(RefSeq) UV-stimulated scaffold protein A homolog isoform X1
KO
K23720
UV-stimulated scaffold protein A
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
140764660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tang03400
]
140764660
DNA repair and recombination proteins [BR:
tang03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
140764660
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
DUF8723
VHS
BORCS6
Motif
Other DBs
NCBI-GeneID:
140764660
NCBI-ProteinID:
XP_072959442
LinkDB
All DBs
Position
8:join(11491837..11492034,11492231..11494000)
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AA seq
655 aa
AA seq
DB search
MGREERNTESENPAISRLIERTTNSTAPEVDPRLLKAIKSTVRSSSDDLRLAVHSLMIQM
KKPHSQVRYLAVLVIDELFMRSKLFRSLFVCDLDQFLSLSVGFRRNMPLPPPSSIASNLR
KMTIELLEKWNGSFGIHYRQLRLGFDYLKNTLRFQFPNRMENAARLQQERREREMRTQEI
LLSKYENLKENYSSIKAEIQSTIEEIAECMEIINVEQEEFTPNYEAEEFKSFTLQQLRLD
SLKEGKKVVETSDNKAVLDTLRELHKLLVSKHLLSVQDWISLLIRVDLTDNKFRDKALKE
FIDVRNKIQSLRNRCGQLGFVLDDVRKKMEEEEEDLWEEGKVEVYTAGTSDANISIVEND
INISSTSKGKDVVPSDGEKALDSNGSGSNSERSKLLSEAPVMTWGPFLDNWGANRDVLAN
QRGLELEGHWGRVDYDAVIPAEKIAELNVHRTVYKEEAGEIQPCLTPLKKGGLCQRRDLR
VCPFHGPIVPRDAEGNPIKQKEGSAEETLKDSSTLTTESKNEYSDAEGSLDLSTDAVEKL
AKQAMKNVRQRDKDLKSLKRVKLAKVREHNEEVLRKAAIASTSYSDAFGQPTETSVQNGV
EVKIKTTLASMLKKKVTVKDRVSKRLLNSRVRDSAITQLTQGDDLNYREAFPNQW
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgggaagggaggagcggaacaccgagagcgagaacccggcgatctcgcgattgatcgag
cggaccaccaattcgacggcccctgaagtcgacccccgcctcctcaaggccatcaaatca
accgtccgttcctcctccgacgacctccgcctcgccgtccattctctcatgatccagatg
aagaagccacactctcaggtgcggtaccttgctgttcttgtaatcgatgaactgttcatg
cgctcgaagctcttcaggtccctctttgtttgcgatctcgatcagttcttgagcttgagt
gttggtttcaggcgaaacatgcctctcccgcctccgtcctcgatcgcgtccaatctgcgc
aagatgaccatcgagctattagagaaatggaatggctcttttgggattcactacaggcag
ctgaggttggggtttgactacttgaagaacactcttaggttccagttcccaaataggatg
gagaatgccgcccggttgcagcaggagaggagggagagggagatgcgcacgcaggagatt
ctgttaagtaagtacgaaaatttgaaggagaattattcatccatcaaggctgagatccaa
tcgactatcgaggaaatagctgaatgtatggaaataattaacgtcgagcaagaagagttt
actcctaactatgaggcagaagaattcaagtccttcacgttgcagcaactgcgccttgat
tctttgaaggaggggaagaaggttgttgaaacaagtgataacaaggctgttctagatact
ctgagagagttgcacaagttattagtctccaagcatttgctatctgtgcaggattggata
tctcttctcattagggttgatctcactgacaacaagttcagggataaggctttgaaggag
tttattgatgtacgcaataagatccaatcgctcaggaatagatgtggtcagcttggtttt
gttcttgatgatgttcgtaaaaagatggaggaggaagaggaggacttgtgggaagaaggt
aaggtagaagtttatactgcggggacttcggatgccaacataagtattgtggaaaatgac
ataaacatttcaagtaccagtaagggcaaggatgtggtacccagtgatggagaaaaggct
ttagatagcaatggttctggttcaaattctgagaggtcaaagcttttgtctgaagctccc
gtgatgacatggggaccattcttggacaattggggtgcaaaccgagatgtgttggctaac
cagaggggactagagcttgagggccactggggtagagtagactatgatgcagtgatacct
gcagagaagatcgcggagctgaatgttcatcgtactgtatataaagaagaggctggtgag
attcaaccttgtcttacgcctttgaagaaaggagggctttgtcagagaagggatctgagg
gtttgcccttttcatgggccaattgttccacgtgatgctgaaggaaacccaatcaagcag
aaagaaggtagtgctgaagaaactctaaaggattcttctacattgacaacagagtcaaag
aatgagtatagtgatgctgaaggatctcttgatttgagcacagacgcagttgagaaactg
gcaaagcaggcgatgaagaatgtacgccaaagggacaaagacttgaaatcactaaaacga
gtaaaacttgcaaaagttcgtgagcacaatgaagaagttttgcggaaagctgctattgct
tcaacatcatactctgatgcttttgggcaacctacagaaacatcagttcaaaatggagtt
gaagtgaagataaagacaactttagcatcaatgcttaaaaagaaagtaactgtgaaagat
agagtatcaaagaggcttctgaactcccgtgtaagggattctgcaataacacagcttact
cagggggatgatttgaactatagagaagcattcccaaatcagtggtaa
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