KEGG   Typha angustifolia (narrow-leaf cattail): 140764765
Entry
140764765         CDS       T11061                                 
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03008  Ribosome biogenesis in eukaryotes
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    140764765
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140764765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tang03021]
    140764765
   03019 Messenger RNA biogenesis [BR:tang03019]
    140764765
   03009 Ribosome biogenesis [BR:tang03009]
    140764765
   03016 Transfer RNA biogenesis [BR:tang03016]
    140764765
Transcription machinery [BR:tang03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     140764765
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     140764765
Ribosome biogenesis [BR:tang03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    140764765
Transfer RNA biogenesis [BR:tang03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    140764765
SSDB
Motif
Pfam: XRN_M XRN_N
Other DBs
NCBI-GeneID: 140764765
NCBI-ProteinID: XP_072959609
LinkDB
Position
8:complement(join(3725772..3725985,3726254..3726336,3726427..3726502,3726702..3726806,3727605..3727762,3727840..3727914,3728780..3728820,3728894..3728970,3729049..3729177,3729333..3729403,3730686..3730781,3730856..3730945,3731146..3731217,3732527..3732604,3733731..3733808,3735020..3735184,3736224..3736355,3736442..3736504,3736588..3736707,3736798..3736989,3737080..3737156,3737242..3737344,3737413..3737640))
AA seq 840 aa
MGIPAFYRWLVERYPLSVVKVLEEAPKVINGVQVPVDTSSPNPNGFEFDNLYLDMNGIIH
PCFHPEDKVYDLYALLPPPSSYDEVYKAVFKYIDHIFSLIRPRKLLFMAIDGVAPRAKMN
QQRARRFRAAKDAADAAAEAEKLMNELEKASYRISQSEKPSTMDSNVITPGTEFMASLSL
ALRYYIQLRLNSDPGWRNIKVILSDANVPGEGEHKIASYIRAQRNLPGFDPNTRHCLYGL
DADLIMLALATHEIHFSILREDVRVPRKNGNIGKLSVKSNFSHKRKGQLELDREENHSML
KIKFQFLHIWILRDYLEHDLRVSSASLKIDFERLIDDFVFICLFVGNDFLPHIPSLEISE
GALDLLMNVYRKEFSSMGGYLTNSFEVDLARVEHFLQVVGSCESAIFRRRIQLQKERDIQ
FGAASSMTKIEQKNGSSWMESTQDSSNLVCRDSPSNGGSCNPMKNQLKMHEEVWKERYYA
EKFEVKTEDDLVNLRRHTVMKYVEGICWFMHYYYQGVCSWQWFYPYHYAPFASDFLDLRQ
LKIQFTLGVPFKPFDQLMGVLPAASAHALPLSYRKLMTDPSSSIIGFYPPDFELDLNGKR
FSWQAVCKLPFVEESHLLQEIEKVEHTLTDDEKQRNKCAFDVLFFHISHPLASKIITFYM
RKRDHPKLSKVKLKKKLDAKVSAGMNGYMYISDKTVCSSEVYSPVEGMEMIRENKTIFVY
YKGPPIQMHIPRVPNGATLPTKLISKKDVLPPPILWHKRSTVQRRMYSERQKIAKQESNH
KNSVLGKRKRMDLQNGKRRPIKQERNHESYTNGSNLGKRKYRSHGGRGRKTRSKYKRKQH
NT seq 2523 nt   +upstreamnt  +downstreamnt
atgggaattccggcattctaccggtggctcgtcgagcggtaccctctctcggtcgtcaaa
gtcctcgaagaagctccaaaggtcatcaatggagtccaggtccccgtcgacactagctcg
ccgaaccccaacggtttcgagttcgataatctctatctcgatatgaatgggatcatccac
ccttgtttccacccagaagacaaggtttatgatctctacgctcttctgcctccgccaagt
tcgtacgacgaggtttacaaggcggtgtttaagtacatagaccacatcttctccttgatt
cggccaagaaagcttcttttcatggcaattgatggagttgcgccgcgagcgaagatgaat
caacagcgagcgaggaggttcagggctgctaaggatgcggctgatgcggcggcagaggca
gagaagctcatgaatgagttggagaaggcatcctatagaatatctcagtctgagaagcct
agcacgatggattcaaatgttatcacacctggaactgagttcatggcctccttatctctt
gctcttcgatactatattcaactaagattgaacagcgatcctggatggcggaacatcaag
gtcattctttctgatgccaatgtgccgggagagggggagcacaaaatagcatcatatatt
cgtgcacagaggaatcttcctggatttgatccaaatacaaggcactgcttgtatggattg
gatgctgacttgatcatgcttgcattagcaacacatgagattcatttttctattctaagg
gaggacgttcgagttccaaggaagaatggaaacattggaaagcttagtgtgaaaagtaat
ttttcacataaaagaaaaggacagttggagttggaccgagaagagaatcatagcatgcta
aaaataaagtttcagttcctccacatttggattctgagagattatttagagcatgaccta
cgagtatcgagtgcatcgctaaagattgactttgagcgcttaattgatgattttgtattt
atctgtttatttgttggaaatgactttcttcctcatattccttccttggaaatttcagag
ggagcgctcgatctgcttatgaatgtatacagaaaggagttctctagcatgggtggttac
ctaaccaactcttttgaggtggatttggcgcgtgttgagcatttcctccaggtagttgga
tcttgtgaaagtgccattttccgaagacgtatccagttgcagaaagaaagggatattcaa
tttggtgcagcttcaagtatgacgaagattgaacaaaagaatggatctagttggatggaa
agcactcaggactcctctaacttggtttgtagagactccccaagtaatggaggatcttgt
aatccaatgaaaaaccagctaaagatgcatgaggaagtttggaaggaaagatactatgca
gagaaatttgaagttaagactgaagatgaccttgtaaatttgagaaggcatacggtcatg
aaatatgttgaagggatttgctggttcatgcactattactaccagggagtctgctcctgg
caatggttctatccatatcattatgcaccttttgcttcagattttcttgacttgagacag
ttaaaaattcaatttacacttggagttccctttaagccatttgaccaattaatgggcgta
ttaccggctgcaagtgcacatgcattgcctttgtcgtacaggaaactgatgacagatcct
tcctcatccatcatcggtttttatccacctgactttgagcttgacttgaatggcaagcgt
ttctcctggcaggctgtatgtaaactaccttttgttgaggaatctcaccttctgcaagaa
attgaaaaagtggaacacactttgacggatgatgagaaacagagaaacaagtgtgcattt
gatgttctgttttttcatatctcacaccccttagcttcaaagattatcacattttacatg
aggaaaagggatcatccaaaattatcgaaggtcaaacttaaaaagaagcttgatgcaaaa
gtcagtgctggaatgaatgggtacatgtacatttctgacaagactgtgtgctcatcagaa
gtatattcgccggttgagggcatggagatgataagagaaaataaaaccatatttgtgtac
tacaaaggacctcctatccagatgcacattcctagagtaccaaatggagcaactttacct
acgaagttgatttccaagaaagatgtgctaccgccgccgatattgtggcataagagatca
acagtacagaggcgtatgtattccgaaaggcaaaagattgcaaaacaagagagcaaccac
aagaatagcgtcctagggaaaaggaagcgcatggatctccagaatggaaaaaggaggccc
atcaagcaagagagaaaccatgagagttataccaatggtagcaacctagggaaaaggaaa
tacaggagccatggtggcagaggcaggaagactagaagtaaatacaagaggaaacagcac
tag

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