Typha angustifolia (narrow-leaf cattail): 140764824
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Entry
140764824 CDS
T11061
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140764824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140764824
03009 Ribosome biogenesis [BR:
tang03009
]
140764824
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140764824
Spliceosome [BR:
tang03041
]
Complex A
U2 snRNP components
U2 related factors
140764824
Complex B
140764824
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
140764824
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
90S particles
Helicases
140764824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
SRP54
ABC_tran
nSTAND3
Cas3-like_C_2
T2SSE
AAA_30
Flavi_DEAD
AAA_7
Motif
Other DBs
NCBI-GeneID:
140764824
NCBI-ProteinID:
XP_072959717
LinkDB
All DBs
Position
8:complement(join(328200..328326,329007..329125,329207..329445,329528..329653,330074..331158,331289..331479,332213..332488))
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AA seq
720 aa
AA seq
DB search
MSTERKRKVSLFDVVDETSVSAKLAKSNGAASAVSATINRWTGRPYSQRYFEILAKRKTL
PVWQQKEEFLQVLKGNQTLILVGETGSGKTTQIPQFVLETDDFGGKRSMVACTQPRRVAA
MSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTILKYLTDGMLLREAMADPLLERYKVII
LDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQNYFNGAPLMKVPGRLHP
VEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEINNMGDQ
VGPVKAVPLYSTLPPAMQQKIFEPAPAPLKEDGPPGRKIVVSTNIAETSLTIDGIVYVID
PGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQPQT
YPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKL
GEIMSEFPLDPQMAKMLVVSPEFNCSNEILSISAMLSVPNCFLRPREAQKAADEAKARFG
HTDGDHLTLLNVYHAYKQSNEDSSWCYENFINQRALKSADNVRQQLVRIMARFNLKLCST
DFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNE
YVLTSRNFIRTVTDVRGEWLIDVAPHYYDLSNFPSCEAKRVLERLYNKREKEKGDNKTRK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagaggaagcgcaaggtgagcctcttcgacgtggtggacgagacctccgtc
tcggccaagctggcgaagtccaatggcgccgcctccgccgtctcggcgacgataaaccgg
tggaccggacgcccgtactcgcagaggtacttcgagatcttggcgaagaggaagacgctc
ccggtgtggcaacagaaggaggagtttttgcaggtgctcaagggtaatcagacattgatc
ttggtcggggagactggaagtggaaagaccacgcagattcctcaatttgtccttgaaact
gatgactttggaggcaagcgctcaatggttgcttgcacccaacctcgtagagttgctgcc
atgtctgtttcccgtcgagttgcagaggaaatggatgtaacaattggagaagaagttggt
tatagcattcgttttgaagattgcagtagccataaaactattctaaaatacctaactgat
ggtatgcttttgagagaagcaatggctgatccacttttggagagatataaggtgatcatt
cttgatgaagctcatgagagaaccttggcaacagatgtgctatttgggcttcttaaagaa
gttctcaggaataggcctgatcttaaattagtcgtgatgagtgctacacttgaggctgag
aaattccagaattacttcaatggagcaccattaatgaaagtacctgggcggctccatcct
gttgagattttctatacgcaggaccctgaaagggattatttggaagctgccatccggaca
gttgtgcagatacacatgtgtgaacctccgggtgatattctagtgttcctcacaggagaa
gaggagattgaagatgcatgccggaaaatcacaaaggagatcaataatatgggcgaccag
gttggccctgtaaaagctgtaccactgtattctacattacctcctgcaatgcagcagaaa
atttttgagcctgctccggccccactgaaagaggatggtcctcctggaaggaagattgtt
gtatcaacaaatattgcagaaacatctttaacaatcgatgggatagtttatgtcattgat
cctgggttttcaaaacaaaaggtttataacccacggatacgtgtggagtctttgctggtc
tctccaatatcaaaggcaagtgcccatcaaagatctgggcgtgctggtagaacgcaacct
ggaaaatgcttccgactttatacagagaaaagtttccataatgatttacaaccacagact
tacccagaaatactgcgatctaatcttgcaaatactgttctcactttgaagaaattggga
attgatgatttagtccattttgacttcatggaccctcctgcacctgagaccttgatgcgg
gcattagaggttttgaactacttgggtgcgctggatgatgatgggaacttgacaaaatta
ggtgaaatcatgagcgagtttcctttggatcctcagatggcaaaaatgcttgtcgttagt
ccagaattcaattgttccaacgagatcctctcaatatcggccatgctttcagtaccgaat
tgctttctccggcctagggaggctcaaaaagcagcagatgaggcaaaagctcggtttggc
cacactgatggggatcaccttactcttttgaacgtgtatcatgcctacaagcaaagcaat
gaagattcttcttggtgctatgagaattttattaatcagagagcactaaagtctgctgac
aacgtgagacaacagcttgtgcgtatcatggctagattcaaccttaagctatgcagcacg
gatttcaacagtcgtgactattatgtgaacatcaggaaagctatgctagctggatatttt
atgcaggtagctcatcttgagcgaactggacactacttgactgtgaaagacaatcaggtg
gttcatcttcacccttcaaactgcctggatcataaacccgagtgggtcatctacaatgaa
tatgtgttaacaagcaggaattttatccgtacagttacagatgttcgtggagagtggctg
atcgacgtagcaccacattattatgatctcagtaatttcccctcgtgcgaggccaagcgt
gtacttgaaaggctgtacaacaagcgggagaaagagaagggagataataaaactagaaaa
taa
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