Typha angustifolia (narrow-leaf cattail): 140764869
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Entry
140764869 CDS
T11061
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140764869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140764869
Spliceosome [BR:
tang03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
140764869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_Aladin
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
PRP4
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR41
Beta-prop_SCAP
eIF2A
Beta-prop_IFT140_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
140764869
NCBI-ProteinID:
XP_072959791
LinkDB
All DBs
Position
8:join(1413007..1413773,1415016..1415469,1415603..1415800,1415890..1415971,1416087..1416181)
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AA seq
531 aa
AA seq
DB search
MEEDDPQTQTLTPTPTPLPIPIPPPIAAIPPPPPSAAALLLRSRGASAAGSDSDREGSLP
PGADDYEISEESRLARERQEKAVQELLMKRRAYAMAVPTNDSAVRARLRRLGEPVTLFGE
REMERRDRLRSLMVHLDAEGQLDRLLKAHDEDDQAAYSAAADEGGDAQIQYPFYTEGTEE
LLNARLEIARYSLARAKARIERAKRRRDDPDEDEEAEAEFVVKQAAEFVLDCSEIGDDRP
LSGCSFSHDATLLATSSWSGITKIWSMPQVTKVATLKGHTERATDVAFSPVDKCLATASA
DRTAKLWSTDGSLLRSFNGHLDRLGRIAFHPSGKYLGTASFDKTWRLWDINTGTELLLQE
GHSRSVYAVCFHPDGSLAASCGLDALARVWDLRSGRSILAFEGHVKPVLGISFSPSGYRL
ATGSEDNTCRIWDLRKRKSIYTIPAHNHLISQVKFEPEEGYFLATSSYDTKAAIWSAQDF
KPIKTLAGHEAKVTSLDISRDGQHIATVAHDRTIKIWSSRGNGKEKPMDID
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagacgacccccaaacccaaaccctaacccctaccccaacgccgctccctatc
cccatccctcccccaatcgccgccatcccacctcctcctccctccgctgctgccctcctc
ctccgctcccgcggcgcctccgccgccggttcagattctgaccgcgagggctccctcccc
cccggcgccgacgactacgagatctccgaggagagccgcctcgcccgcgagcgccaggag
aaggccgtccaggagctcctcatgaagcggcgggcctacgccatggccgtccccaccaac
gactctgccgtccgcgcccgcctccgccgcctcggagagcccgtcaccctcttcggcgag
cgcgaaatggagcggcgggaccggctccgctccctcatggtccacctcgacgccgagggg
cagctcgatcgcctactcaaagcccacgacgaagacgaccaagccgcttattccgccgcg
gccgacgagggaggagacgcacagatccagtatccgttttatacggaggggacggaggag
ctcctaaatgcgaggttggagatcgcaaggtactcgcttgcacgtgcgaaggcgaggatt
gagagggcgaagaggaggagggatgatcctgacgaggatgaagaggcggaggcggagttt
gtcgtgaagcaggcggcagaatttgttctcgactgcagtgagattggggatgacaggcca
ctgtctgggtgttcgttctcgcacgatgcgacattgctggccaccagttcctggagtggc
attactaaaatatggagcatgccgcaagtaacaaaggtcgcaaccttgaagggtcacaca
gaacgtgcaactgatgtggcattctctccggtggataaatgtttagcaactgcatcagca
gatagaacagcgaagttgtggagtacagatgggtcccttttaagatcatttaatggtcat
ctagatcgtcttggccgcattgcatttcatccatctggaaagtatcttggaactgccagc
tttgacaagacgtggagattgtgggacattaatactggaacagaattgctactccaagag
ggacatagtagaagtgtgtatgcagtttgtttccatcctgatggatctttagctgcgtca
tgtggtcttgatgctcttgctcgtgtatgggacctacgatctggtagaagtattcttgct
ttcgagggacatgttaaacctgtccttggaattagcttctctcctagtggctatcgctta
gcaactggcagtgaagataatacttgtcgaatatgggacttgagaaaaagaaagagtata
tatactatcccagctcataatcatctaatttctcaagtgaagttcgagcccgaagaagga
tatttcttggcaacatcatcatatgataccaaagcagcaatttggtcagctcaggatttc
aaacctattaaaaccttagctggacatgaagcgaaggttactagtttggacataagtaga
gatgggcagcacatagcaactgttgctcacgaccgtactatcaagatctggtccagcaga
ggcaatggaaaggagaaacctatggacattgattga
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integrated database retrieval system
